Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1305 ATGGATCCTTCAAGCTCGGGTTTATTGACGGTGCTAGATCGAATCCGTGGGGCATTCGTACCATGCATAGTGATAATCGAGGCTTTGATACTCCCTATGACCGAATGTTTCGGTTTTCGTCGACGCGTCCAGAAATGTCGATACGGGGCCAAAGATCTGACCCAACTGGCTGACGAAACCAGATTTACTGTTAACGAAGTGGAGGCATTGTTTGAGCTTTTTAAGAAATTAAGTAGCTCAATAATTGATGACGGCTTGATTCACAAGGAGGAGCTTCAACTGGCAATATTTCATACCTCACAGGGAGAAAATCTTTTCCTGGATCGAGTATTCGATCTTTTTGACGAAAAGAGAAATGGTGTTATAGAGTTTGAGGAATTTGTCCATGCACTCAATGTTTTCCATCCTTATGCCCCAGTAGAAGAAAAAATTGATTTTGCATTTAGACTATACGATCTGAGCCAAACTGGGTATATTGAACGAGAAGAGGTCAAGCAAATGGTTATAGCCATCTCGATGGAATCTGACATGAATCTGTCAGACGATTTTCTTGAAGCTATTGTTGACAAGACTTTTGCCGATGCCGATAAGGACAACGATGGTAGAATTAGTAAAGAAGAATGGAAAGATTTTGTGAGTCGAAAGCCATCTCTTTTGAAGAACATGACCCTTCCATATCTTAAGGATGTCACCACTCTGTTTCCGAGTTTTATTTTCGACACCAACGTTGAAGCTTGA 738 0.4119 MDPSSSGLLTVLDRIRGAFVPCIVIIEALILPMTECFGFRRRVQKCRYGAKDLTQLADETRFTVNEVEALFELFKKLSSSIIDDGLIHKEELQLAIFHTSQGENLFLDRVFDLFDEKRNGVIEFEEFVHALNVFHPYAPVEEKIDFAFRLYDLSQTGYIEREEVKQMVIAISMESDMNLSDDFLEAIVDKTFADADKDNDGRISKEEWKDFVSRKPSLLKNMTLPYLKDVTTLFPSFIFDTNVEA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1305 245 Pfam EF hand 107 127 IPR002048 GO:0005509
Lele27g1305 245 Pfam EF-hand domain pair 141 211 IPR002048 GO:0005509
Lele27g1305 245 Gene3D - 52 245 - -
Lele27g1305 245 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Lele27g1305 245 PANTHER CALCINEURIN B 35 244 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele27g1305 245 ProSiteProfiles EF-hand calcium-binding domain profile. 183 218 IPR002048 GO:0005509
Lele27g1305 245 FunFam calcineurin B-like protein 3 52 245 - -
Lele27g1305 245 CDD EFh 143 213 IPR002048 GO:0005509
Lele27g1305 245 SUPERFAMILY EF-hand 53 237 IPR011992 -
Lele27g1305 245 ProSitePatterns EF-hand calcium-binding domain. 152 164 IPR018247 -
Lele27g1305 245 PRINTS Recoverin family signature 157 175 - -
Lele27g1305 245 PRINTS Recoverin family signature 110 131 - -
Lele27g1305 245 PRINTS Recoverin family signature 48 62 - -
Lele27g1305 245 PRINTS Recoverin family signature 203 223 - -
Lele27g1305 245 ProSitePatterns EF-hand calcium-binding domain. 196 208 IPR018247 -
Lele27g1305 245 SMART efh_1 106 134 IPR002048 GO:0005509
Lele27g1305 245 SMART efh_1 187 215 IPR002048 GO:0005509
Lele27g1305 245 SMART efh_1 143 171 IPR002048 GO:0005509
Lele27g1305 245 CDD EFh 107 168 IPR002048 GO:0005509
Lele27g1305 245 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1305 Lele-ChrLele27 19783603 19786583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1305 22 244 EF-hand Containing Proteins AT4G26570 58.590 9.73e-89 260