Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1288 ATGGACATACTCTGCTTCGGATTGAGGTTGGTATTAGAATATTGGATGGAGGAATATAATAATAATCTGAGCGAAAACAATGGCGGTAGGGCTAATTTCTTGTACTCTTCGGGTGGTATTGGGTACGGAAGAAGTAGCAGCGGTGGGGGTTCGAGCGCTGCTCCCCATCAGTTGCCCATCAATACTTTTCTTCTTCAGTCTGCTGCTTCCGACTGCTTTCACCAATCCGATCAGCCTCATCCCACTGTTAAAACCGAGGCCAATACCTCACACCATGCTCAGATTTTTCAGTATCCTCTTCTCAGGGGAAATCTTCACATGATGCACCAAGAAGGAGCAGCAGCTGGAGACAGCTCCAACGAGGTGGGAGCTCCACCGGAAGTGGTGGCGCATCTGGCTGCTGCTCGCCAGGAGTTTGAGGCACGGCAGCGATCTTCATCCACTTCCAGGGAAGCTTCGAAGGATCCTGAACTGGACCAGTTCATGGTGCGCTTCTCTCACCCCTTGCCTATCCAAGAAGCCATGGATTTCATGCGCAGGATCGAAACTCAACTCAATATGCTTTGCAATGGATCCGTCCGTATCTTCTCTGATGATAAGTGTGAAGGGGTTGGTTCGTCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAATTGCCAGAGATTGATCCCAGAGCTGAAGACCGTGAGCTGAAGAGCCACTTACTGAGGAAGTACAGCGGTTACTTAAGCAGCCTCAAGCAAGAACTGTCCAAGAAAAAGAAGAAAGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTGCTCAACTGGTGGGAATTACACTACAAATGGCCCTACCCTTCGGAGTCAGAGAAGGTGGCGTTGGCTGAATCGACAGGATTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTCATGGTGATGGATGGGCTTCATCCACAGAACGCCACTCTCTATATGGATGGTCACTACATGCCTGATGGTCACTACCGTCTAGGCCCATGA 1050 0.4876 MDILCFGLRLVLEYWMEEYNNNLSENNGGRANFLYSSGGIGYGRSSSGGGSSAAPHQLPINTFLLQSAASDCFHQSDQPHPTVKTEANTSHHAQIFQYPLLRGNLHMMHQEGAAAGDSSNEVGAPPEVVAHLAAARQEFEARQRSSSTSREASKDPELDQFMVRFSHPLPIQEAMDFMRRIETQLNMLCNGSVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKSHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRLGP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1288 349 MobiDBLite consensus disorder prediction 200 228 - -
Lele27g1288 349 SUPERFAMILY Homeodomain-like 252 326 IPR009057 -
Lele27g1288 349 ProSiteProfiles ELK domain profile. 231 251 IPR005539 GO:0003677
Lele27g1288 349 Pfam KNOX2 domain 152 189 IPR005541 GO:0003677|GO:0005634
Lele27g1288 349 MobiDBLite consensus disorder prediction 143 158 - -
Lele27g1288 349 FunFam Homeobox protein knotted-1-like 2 256 318 - -
Lele27g1288 349 SMART HOX_1 253 318 IPR001356 GO:0003677
Lele27g1288 349 ProSiteProfiles 'Homeobox' domain profile. 251 314 IPR001356 GO:0003677
Lele27g1288 349 CDD homeodomain 263 315 IPR001356 GO:0003677
Lele27g1288 349 MobiDBLite consensus disorder prediction 138 158 - -
Lele27g1288 349 Pfam ELK domain 231 252 IPR005539 GO:0003677
Lele27g1288 349 Gene3D - 256 318 - -
Lele27g1288 349 Pfam Homeobox KN domain 271 310 IPR008422 GO:0003677|GO:0006355
Lele27g1288 349 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 121 321 - -
Lele27g1288 349 SMART ELK_2 231 252 IPR005539 GO:0003677
Lele27g1288 349 ProSitePatterns 'Homeobox' domain signature. 289 312 IPR017970 GO:0000981|GO:0006355
Lele27g1288 349 SMART KNOX2_2 148 190 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1288 Lele-ChrLele27 19650167 19654831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1288 58 349 Homeobox Transcription Factor Family AT4G08150 59.644 6.46e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele27g1288 Homeobox_KN 9.5e-17 CL0123