Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1287 ATGGGTTTTGCCGATATGCCTAATACGGGCCTCGGCCTCGGCCTCGGTCTCGGTCTTCACCAGCAGTCGGAGAGTTGCCGCAGAGAAATCCGACTCAAGAAACATGAGGATCCGTACAAATGTGACCAGAAGCTATATACCTCTCTTACGTTAGGACCGCCTGATGATCTGGAGGCGAATGAACAGCTTCTTCCTGCCAAGACTGAATCTGTTCATTTCCGTGCAATAGCGGCGTCTTCTTCTCCCAGCGCCGCCTCTTCCTTCTCCAACTCCTCCAGCATCAAGAGGGAGAACAAGGAGTCCGTCGGCGACGAGCTTGATTTGGAAGTAGACAATAACGTTGATAATCCATCCAAGGTAGGCCTCGACGTAGACGAAGACGGTAATCCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCCGCTGTTTTAGAGGACAGCTTCAAAGAGCACTCCACTCTCAATCCAAAGCAGAAGCAAGAATTGGCGAGGAAGTTAAACCTGCGTGCGAGACAAGTAGAGGTCTGGTTTCAAAACCGGAGAGCGAGGACGAAACTGAAACAAACGGAAGTTGACTGTGAGTTGCTCAAGAAGTGCTGCAAAACGCTAACGGAAGAGAACAGGAGACTGCAAAAGGAGTTGCAAGAACTGAGATCAATGAAAACGACGTCGCAGGGACCCTTGTATATGCAGCTTCCGGCATCCACCCTCACCTTATGCCCTTCTTGTGAGAGAATTTGCGGCGAAGGCGGCGGAACCACCGCCAACGGCTCTCCCGCTACCACCGCCCTCCTTATCGGATCAAAGGCCCATCACTTGTACAAAAGCAACTATCCGTTCACCCACTCATCCGCAGCTTGCTAA 864 0.5127 MGFADMPNTGLGLGLGLGLHQQSESCRREIRLKKHEDPYKCDQKLYTSLTLGPPDDLEANEQLLPAKTESVHFRAIAASSSPSAASSFSNSSSIKRENKESVGDELDLEVDNNVDNPSKVGLDVDEDGNPRKKLRLTKEQSAVLEDSFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCKTLTEENRRLQKELQELRSMKTTSQGPLYMQLPASTLTLCPSCERICGEGGGTTANGSPATTALLIGSKAHHLYKSNYPFTHSSAAC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1287 287 MobiDBLite consensus disorder prediction 120 138 - -
Lele27g1287 287 CDD homeodomain 130 188 IPR001356 GO:0003677
Lele27g1287 287 Pfam Homeobox associated leucine zipper 187 221 IPR003106 GO:0006355|GO:0043565
Lele27g1287 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 260 - -
Lele27g1287 287 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Lele27g1287 287 SUPERFAMILY Homeodomain-like 128 195 IPR009057 -
Lele27g1287 287 Coils Coil 193 223 - -
Lele27g1287 287 Pfam Homeodomain 131 185 IPR001356 GO:0003677
Lele27g1287 287 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Lele27g1287 287 SMART halz 187 232 IPR003106 GO:0006355|GO:0043565
Lele27g1287 287 SMART HOX_1 129 191 IPR001356 GO:0003677
Lele27g1287 287 MobiDBLite consensus disorder prediction 82 96 - -
Lele27g1287 287 MobiDBLite consensus disorder prediction 82 138 - -
Lele27g1287 287 FunFam Homeobox-leucine zipper protein 18 118 192 - -
Lele27g1287 287 Gene3D - 124 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1287 Lele-ChrLele27 19641714 19642835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1287 125 287 Homeobox Transcription Factor Family AT2G22800 62.500 2.53e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele27g1287 Homeodomain 3.3e-17 CL0123