Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1285 ATGGGGAGGGCTCCTTGCTGCGATAAAGCGAACGTGAAGAAAGGACCTTGGTCCCCAGAAGAAGATGCCAAACTCAAGTCCTACATCGAACAGCATGGAACTGGCGGAAACTGGATCGCTTTGCCTCAGAAGATCGGGCTAAAGAGATGTGGGAAGAGTTGTCGACTGAGGTGGCTGAACTATCTTCGACCAAATATCAAGCATGGGGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTCTACGTTAGTATTGGAAGCAGTTGGTCGGTGATAGCAGCACAATTGCCAGGAAGAACAGACAACGACATAAAGAACTACTGGAACACAAAACTGAAGAAGAAGCTTCTGGGTAATAATAAGCACCGTAAAGATCATCAACAATTACGTAGTAAGAGCAGGCACGAAGGAGCAAATAGAATCACCACCTGTCCCGATTCCTTACTAGTTCCTGAAAATTCTTCTACAAATACTATTTTTCCACAACCATATTGGCCACTAATGCCCGTGATATCTCCCTTGCAATATTCCAATCAAGAGCCATGTTTCAACGATCAAGATTCCATCAAAAAATTGCTCATGAAACTGGGAGGAAGATTTTCAGATGAGGATAATGATCACAATTATTACCATCCTACCCTCGATACTTTGAATATTAATCCCAATCTATTCTCAGATCATGGTACTCCCTGCACACAACCAGCAGTTTGTGAAGAACAAGCAAACATGGCTTCTTCTTCCTCTTGCATGATAAGTAACGGTACGATATCAGTTAACAACAATCAGATAGAATTGGGCCAGGAGTCAGGGGGACTTGAGGAGATAGTATGCGGTAATAGTAGTTATACTTATCCACAAAGATTAGATGGACTCGAACTGTTGTTTGGGGACGACATGATGGTCAATGACAAGATAGCCCCACCTGCTGATAACAACTCTCTCATTTATCAATCTTTTGTTTCTTCCAGTTACCAGGACATGCCAAAACAATGTGCTTTCCCAGAGTTAAGGTTTAACTGGCCATAA 1029 0.4247 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSSWSVIAAQLPGRTDNDIKNYWNTKLKKKLLGNNKHRKDHQQLRSKSRHEGANRITTCPDSLLVPENSSTNTIFPQPYWPLMPVISPLQYSNQEPCFNDQDSIKKLLMKLGGRFSDEDNDHNYYHPTLDTLNINPNLFSDHGTPCTQPAVCEEQANMASSSSCMISNGTISVNNNQIELGQESGGLEEIVCGNSSYTYPQRLDGLELLFGDDMMVNDKIAPPADNNSLIYQSFVSSSYQDMPKQCAFPELRFNWP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1285 342 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele27g1285 342 CDD SANT 71 113 IPR001005 -
Lele27g1285 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Lele27g1285 342 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele27g1285 342 PANTHER OS09G0431300 PROTEIN 1 266 - -
Lele27g1285 342 CDD SANT 16 62 IPR001005 -
Lele27g1285 342 Gene3D - 7 68 - -
Lele27g1285 342 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele27g1285 342 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele27g1285 342 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele27g1285 342 Gene3D - 70 142 - -
Lele27g1285 342 FunFam Transcription factor MYB36 70 139 - -
Lele27g1285 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lele27g1285 342 SMART sant 13 64 IPR001005 -
Lele27g1285 342 SMART sant 67 115 IPR001005 -
Lele27g1285 342 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1285 Lele-ChrLele27 19622029 19623377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1285 1 218 MYB Transcription Factor Family AT3G49690 58.667 1.71e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele27g1285 Myb_DNA-binding 2.3e-14 CL0123