Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1278 ATGTGTTACGGTGCAGCGGAGACTACAGGCTTCTATTCTCCATTGACTGTCATGCCTCTCAAGTCCGATGGCTCACTTTGTATAATGGAAGCTCTCACTAGATCACAAACTCAAGTGATGACGCCGAATTCGACTCCGAAACTGGAGGACTTTCTCGGTGGTGCAACTATGGGGAGTCACGATGCGATGGCCTTGAGCCTTGACAGCATCTACTATGGCACTCAGAATCATGCACAGACTCAAGCCCATAGAGATCATTCTCTTGACTTTCTTTCGGAGCCTTTCAGGCAGCAAGACCCCATCTCCATCCAGTCGCATCCTTATTATTCTGGAGTTGCTTGCCATGCTATTTATCCATCCCCATTGGAGCAAAAAAGCAAGGACCCCCAAATGCAACCAATGTCCGAAGAAGGCATCACTTGTCTGAAAAACTGGGTGGCTCACGGCAGGAACTATTCTGCTGAACAAGGTTTAGAGCAGAAAAAGAATGGTAGCATGGAGGACGACGGTGGTGGAGCTTCCGGGTCAGTTGGTAAAGTAGGGTGTGGAGATTTACAGCCCCTGGGTTTATCCGTGAGCCCTGGTTCACAGTCTAGCTGTGTAACTGCTCCACAGCAGATTTCACCTCCTGCGACTGACGTGGTCGCAATGGAAGCAAAGAAGAGAGGGCCTGGAAAGTTGGGCCAAAAACAGCCTGTGCATAGGAAATCGATCGACACTTTTGGCCAGAGAACGTCTCAGTTCCGAGGCGTTACAAGGCACAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGTAAGAAGGAAGGGCAGACGAGGAAAGGAAGACAAGGGGGCTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCAGCCCTCAAGTACTGGGGACCCTCAACCCATATTAACTTTCCGTTGGAAAATTACCAGGCTGAACTTGAAGAAATGAAGAACATGAGCAGGCAAGAGTACGTTGCCCACTTAAGAAGAAAAAGCAGTGGTTTTTCCCGAGGGGCTTCAATGTATAGAGGAGTGACGAGACACCATCAACATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCAGGAAACAAAGACCTTTATCTTGGAACATTTAGCACCCAGGAGGAAGCAGCTGAAGCATATGACATAGCTGCAATTAAGTTTCGAGGTGTGAACGCAGTGACCAACTTCGACATATCTAGGTACGATGTGGACAGGATTATGGCCAGCAATACCCTTCTGGCTGGCGAGCTAGCTCGGCGAAACAAAGATAGCGAGCCGAGAATGGAAGCCATTGAGTACAATGTAGCATCGAACCAGAGCAATGGGGACGCGGTTCAAGCCCAAAGGAACAACAACAGCAGCAGCAACAACGGTTCAGATTGGAAGATGTTGTATACCCCAAATGGGTGTGAGCAGAAAACCGTGAACTGCGGAAATTACAGGGATTCAGCCATGTTTGTGGGCCTAAGGGATCTCATTGGGATTGACTCAGCAGCGAGTTCAGTTGCTGTTCTACTAGTTCCAGCTAAGTACAAGAACCAGCTCAATATGTTTCCCCAATAA 1584 0.4817 MCYGAAETTGFYSPLTVMPLKSDGSLCIMEALTRSQTQVMTPNSTPKLEDFLGGATMGSHDAMALSLDSIYYGTQNHAQTQAHRDHSLDFLSEPFRQQDPISIQSHPYYSGVACHAIYPSPLEQKSKDPQMQPMSEEGITCLKNWVAHGRNYSAEQGLEQKKNGSMEDDGGGASGSVGKVGCGDLQPLGLSVSPGSQSSCVTAPQQISPPATDVVAMEAKKRGPGKLGQKQPVHRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQAELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVDRIMASNTLLAGELARRNKDSEPRMEAIEYNVASNQSNGDAVQAQRNNNSSSNNGSDWKMLYTPNGCEQKTVNCGNYRDSAMFVGLRDLIGIDSAASSVAVLLVPAKYKNQLNMFPQ 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1278 527 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 41 457 - -
Lele27g1278 527 Pfam AP2 domain 347 396 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 Pfam AP2 domain 247 302 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 PRINTS Ethylene responsive element binding protein signature 386 406 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 ProSiteProfiles AP2/ERF domain profile. 247 310 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 SUPERFAMILY DNA-binding domain 246 312 IPR016177 GO:0003677
Lele27g1278 527 SMART rav1_2 346 410 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 SMART rav1_2 247 316 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 FunFam AP2-like ethylene-responsive transcription factor 345 406 - -
Lele27g1278 527 Gene3D AP2/ERF domain 246 312 IPR036955 GO:0003700|GO:0006355
Lele27g1278 527 Gene3D AP2/ERF domain 346 406 IPR036955 GO:0003700|GO:0006355
Lele27g1278 527 CDD AP2 246 310 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 FunFam AP2-like ethylene-responsive transcription factor ANT 246 312 - -
Lele27g1278 527 SUPERFAMILY DNA-binding domain 345 406 IPR016177 GO:0003677
Lele27g1278 527 CDD AP2 345 406 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 MobiDBLite consensus disorder prediction 158 177 - -
Lele27g1278 527 ProSiteProfiles AP2/ERF domain profile. 346 404 IPR001471 GO:0003700|GO:0006355
Lele27g1278 527 Coils Coil 311 331 - -
Lele27g1278 527 MobiDBLite consensus disorder prediction 447 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1278 Lele-ChrLele27 19563186 19566619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1278 1 431 AP2-EREBP Transcription Factor Family AT4G37750 55.940 2.29e-158 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele27g1278 AP2 6.1e-10 CL0081