Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1276 ATGGATTCTGATCAAGCCAAGCTGTTTGTGGGTGGCATTTCCCGGGACACTACCGAAGATGTTTTGAAAGACCACTTCGCCAAGTACGGCTCTGTTTTGGGTTCCACAATTTCGGTGGACCGCAACACCAAAATTCCTAGAGGCTTTGGCTTCGTTAGGTTCTCCGACGTTTCGGCGGCTGATAAAGCCCTTCAAGACACGCATGTCATACTCGGAAGAACGGTCCGTTCAACTTCACTTTTCCTTTATACTTCTTTTTATCTTTTTCTTCTTTTGCTTGATGGAAGGCTTGAGTCTAGGAATAGAAGAGAAATTCGAGATAAAATGGAGTTGTGGCAGATGAGTGATGTCGGCCATTATTGCTTGAGAACTGGGTCCATTTTTCCCTGTTTCGTCTTGTTTCAAGTAGAAGTGAAGAAAGCAATACCTAGATGTGAACATCAACATCAAAACCTACCCCAGAGTAGAGGGACGAGTAACTTTAGTAATTATGACAGTAGCACCAAAAAGGTTTTTGTAGGGGGCCTATCAGCTGGTATATCGGAGGACGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGGTTTGGTTTCATTACTTTTGATTCAGAAGAATCTGTGGAAAATGTGATGATGAAAAGCTTCCATGATTTGAATGGTAGACAAGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAATAATGGTTATGATGGTGTTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAAGTTCCCCTCAGTATAGTCCTAGGTACATTCCCCCTGCGTTTGCCCCTCTTCCCTGGTACGGTGGGGATGGATTGTATTTTTATGGATCTAACATGTATGGTTGCTGGCTTCCTATGGGAGGGTATGGTTGCAATGGATCTGCAGTTCCATTTGATGTTCCTAGGAATTTCTGGTATGGTCCTCCGGTAGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCTCCAACCCAAGCATATGGGAGTGTTAGGGGTGTACTCGATACTGAAACAAGGGGCTACAATGGCATCATGGGATCTGCAGCAAGTTTTAAGTTAAATCAGGTTTTCAGTGCCAATGGATTTCTGCCAGCTGATGTTACGTCATCATCTCCTAAGATTGAAGAGTTGAAGCAGGAAGTGGAGTCTCTAAGTTTGAAAGAAAGCAATGCTGAAGCTTCTAGTTAA 1254 0.4394 MDSDQAKLFVGGISRDTTEDVLKDHFAKYGSVLGSTISVDRNTKIPRGFGFVRFSDVSAADKALQDTHVILGRTVRSTSLFLYTSFYLFLLLLDGRLESRNRREIRDKMELWQMSDVGHYCLRTGSIFPCFVLFQVEVKKAIPRCEHQHQNLPQSRGTSNFSNYDSSTKKVFVGGLSAGISEDEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVENVMMKSFHDLNGRQVEVKRAVPKDGNNGYDGVNRMRYKNGRGAPKSSPQYSPRYIPPAFAPLPWYGGDGLYFYGSNMYGCWLPMGGYGCNGSAVPFDVPRNFWYGPPVATAQTCQVPYASPTQAYGSVRGVLDTETRGYNGIMGSAASFKLNQVFSANGFLPADVTSSSPKIEELKQEVESLSLKESNAEASS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1276 417 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Lele27g1276 417 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 361 - -
Lele27g1276 417 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 164 248 - -
Lele27g1276 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lele27g1276 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 236 IPR000504 GO:0003723
Lele27g1276 417 SUPERFAMILY RNA-binding domain, RBD 148 267 IPR035979 GO:0003676
Lele27g1276 417 Coils Coil 396 416 - -
Lele27g1276 417 Gene3D - 1 79 IPR012677 -
Lele27g1276 417 Gene3D - 139 275 IPR012677 -
Lele27g1276 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 246 IPR000504 GO:0003723
Lele27g1276 417 SMART rrm1_1 170 242 IPR000504 GO:0003723
Lele27g1276 417 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele27g1276 417 MobiDBLite consensus disorder prediction 245 273 - -
Lele27g1276 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1276 Lele-ChrLele27 19551224 19552574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1276 8 307 Eukaryotic Initiation Factors Gene Family AT2G36660 22.792 7.61e-12 65.1