LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g1273	ATGTTCTTCCACGACGACGTCGTCCAATCCCTCCAGTTCCCGTCATCATGCCCGCTTCTTGAGACCATGCTGACGCCAGGTGAGGTACAGGAGTTATTGTCCCTCGTCCAAGCCGAGGATCCGGCCAGTCCCCCGAGCTCCGGTTCGCAAGGATCAAGCCGGGCGGTTTACTCGTTGGACGAGAGAAAGCGCAGGCGCATGCAGTCGAACCGGGAGTCAGCCCGGCGGTCCCGCTGGAGAAAGAAGAGGCATTTAGAGAGCCTCACGAACCAAGTGAACCGGCTAAAAACCGAAAACCGACAACTCAAAAACCAGCTAGGCTTCACCCTTCACCAGCATCTCACAGTCTCCCTACAGAACGCCCAACTAAGATCCGAATCCGAAATCCTCACGACCCGGCTGTCGCATCTATATCGGGCTTTAAGCCCCACCACTCTATAA	441	0.5624	MFFHDDVVQSLQFPSSCPLLETMLTPGEVQELLSLVQAEDPASPPSSGSQGSSRAVYSLDERKRRRMQSNRESARRSRWRKKRHLESLTNQVNRLKTENRQLKNQLGFTLHQHLTVSLQNAQLRSESEILTTRLSHLYRALSPTTL	146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g1273	146	Gene3D	-	60	113	-	-
	Lele27g1273	146	MobiDBLite	consensus disorder prediction	57	74	-	-
	Lele27g1273	146	CDD	bZIP_plant_GBF1	63	113	IPR045314	GO:0003700\|GO:0006355
	Lele27g1273	146	SUPERFAMILY	Leucine zipper domain	62	113	IPR046347	GO:0003700\|GO:0006355
	Lele27g1273	146	SMART	brlzneu	58	122	IPR004827	GO:0003700\|GO:0006355
	Lele27g1273	146	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	60	106	IPR004827	GO:0003700\|GO:0006355
	Lele27g1273	146	MobiDBLite	consensus disorder prediction	40	56	-	-
	Lele27g1273	146	PANTHER	BZIP TRANSCRIPTION FACTOR 44	42	141	-	-
	Lele27g1273	146	FunFam	BZIP transcription factor	60	111	-	-
	Lele27g1273	146	MobiDBLite	consensus disorder prediction	37	85	-	-
	Lele27g1273	146	Pfam	bZIP transcription factor	62	106	IPR004827	GO:0003700\|GO:0006355
	Lele27g1273	146	Coils	Coil	85	105	-	-
	Lele27g1273	146	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	65	80	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g1273	Lele-ChrLele27	19511432	19511872	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g1273	46	137	bZIP Transcription Factor Family	AT2G18160	45.652	1.74e-21	83.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele27g1273		bZIP_1	5.8e-10	CL0018