Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1262 ATGGAAGAATACCAACTCACAAGCACAACCATCATTACAGTGAGATTTGAGAATGAGAGCAGGCCAGCTGACAGTTGCCCATTTGGAGATATGGGACCTCCCAATCACAAAGTGGCTTTCCGAAGCAATACGTATTTTTTTACTCTCACTTGGACACATTTGCCATTCTCTTTTTCTCAGATCATCATCTTCATTGCTCTGTTGAAACAGAAACTCAAAATATTCAGAGAATCATCTGCTTGCTTCTACTTACTGGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAACTTACAGCAGATAACCGAGTGTATCATAAAGCTTGCTTCCGATGCCACCACTGCAAAGGAACCCTCAAGCTAAGCAACTACAATTCTTTTGAGGGAGTTCTTTATTGCAAGCCCCACTTCGACCAAATTTTCAAAAGAACTGGCAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCAAAACCAGAAAAACAAATTGACACTGAGAAACCTGCAGTAACCAAAGCCTCAAGTATGTTTGGTGGTACCAGAGATAAATGCACTGGTTGTCAGAAAACAGTTTACCCAACTGAGAAGGTTACTGTAAATGGAACACCTTACCACAAGAGTTGTTTCAAATGCTCCCATGGAGGGTGTGTTATAAGTCCTTCGAACTACATCGCGCACGAGGGTAAACTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGGTGACCATGACAAGAGTGAAACAAATGACAAGATCATCAATGGGGAAGAAGTTGCTGCCTAG 834 0.4197 MEEYQLTSTTIITVRFENESRPADSCPFGDMGPPNHKVAFRSNTYFFTLTWTHLPFSFSQIIIFIALLKQKLKIFRESSACFYLLGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQIFKRTGSLDKSFEGTPKIAKPEKQIDTEKPAVTKASSMFGGTRDKCTGCQKTVYPTEKVTVNGTPYHKSCFKCSHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHDKSETNDKIINGEEVAA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1262 277 PANTHER OS06G0237300 PROTEIN 71 175 IPR045268 -
Lele27g1262 277 Gene3D Cysteine Rich Protein 186 255 - -
Lele27g1262 277 Gene3D Cysteine Rich Protein 86 155 - -
Lele27g1262 277 CDD LIM2_SF3 191 251 - -
Lele27g1262 277 ProSitePatterns LIM zinc-binding domain signature. 91 125 IPR001781 -
Lele27g1262 277 MobiDBLite consensus disorder prediction 253 277 - -
Lele27g1262 277 ProSiteProfiles LIM domain profile. 89 149 IPR001781 -
Lele27g1262 277 ProSiteProfiles LIM domain profile. 189 249 IPR001781 -
Lele27g1262 277 FunFam LIM domain and actin-binding 1 85 155 - -
Lele27g1262 277 CDD LIM1_SF3 87 149 - -
Lele27g1262 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 84 116 - -
Lele27g1262 277 SMART lim_4 190 242 IPR001781 -
Lele27g1262 277 SMART lim_4 90 142 IPR001781 -
Lele27g1262 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 216 - -
Lele27g1262 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 256 - -
Lele27g1262 277 FunFam LIM domain and actin-binding 1 185 255 - -
Lele27g1262 277 Pfam LIM domain 91 144 IPR001781 -
Lele27g1262 277 Pfam LIM domain 191 245 IPR001781 -
Lele27g1262 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 157 - -
Lele27g1262 277 MobiDBLite consensus disorder prediction 253 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1262 Lele-ChrLele27 19436313 19438919 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele27g1262 LIM 1.1e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1262 27 19436313 19438919 Lele01g0804 01 4664450 4665773 CCT
Lele27g1262 27 19436313 19438919 Lele03g0797 03 4665025 4666476 CCT
Lele27g1262 27 19436313 19438919 Lele04g0797 04 4886545 4887950 CCT
Lele25g0816 25 5254527 5256773 Lele27g1262 27 19436313 19438919 hybridization
Lele26g0828 26 5314101 5317763 Lele27g1262 27 19436313 19438919 hybridization