Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1260 ATGGCGTCGAAGAGTACTTGGCGCACATTGAGAAGTGGTTTTGTTGCATTCTTTGTGAGAGAAAGATCCAAACTCCTCCGATTGTTTTCCAAGATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTCGAAGAGCCGCCACAGTCGCCGGAATCCCTCGCAACAAGAGATTTCTCGGCCAGTGGACTCTCTTCGAGGACAGGGGATTGGGAATCTAAATTTGATGACACCCAAGTAGATGAAGCTGAATCTATTCTTAAAGAAGCTCTCTCCTTGAACTACGAGGAAGCTAGGGCTTTGTTGGGGAGGCTTGAATTCCAAAGAGGGAATTTCGATGCTGCCCTACAAGTATTTCAGGGGATTGACATTAAGGGTTTGACTCCGAGGATGATTAGGGCCATTTCTGAGAGAACCAAGCAAAGAAAACCACGTTCTAAGGCCGATCACGTGCTCCCCTGCATAATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCTATTCTGCTTAAAACTAAATCATTGGAGGCACTCGCACGCTACACTGAGGCTGCAAAGGAATGCAAAATAATTCTGGACATGGTTGATTCTGCGCTACCAGCTGGAATGCCTCAAGGTTTTGGCGAAGATTGTAAACTGCAAGAAATGTTCCACCGAGCATTGGAGTTGCTTCCTAAACTTTGGACCAGTGCAGGCTTACTGGATGAAGCTATCACTGCATATCGGCGGGCTCTGATCAAGCCGTGGAATTTGGAGCAACAAAGGCTGGCCACCGTGCAGAAAGATTTAGCTGTTACCCTTCTTTATGGTGGTGTTGAAATAAGCCTTTCACCTCATTTGCATGTGTGGGGTGTAACAACGCCGAACACTAACATTGAAGAAGCTGTATTGTTGTTACTAATTCTCATGGGAAAGATAGCACTTCAGGAAATCGAATGGGATTCTGAACTATTGGATCATCTTACATTTGCACTTTCAATTACTGGGATGTTTGAATCATTGGCCGATCATTTTGAGCAGATCCTTCCTGGTGTTTATAGTCGTGCTGAGAGGTGGTACTTTCTTGCCCTTTGTTATAGTGCTGCAGGACAGAATGAAACAGCATTGAACCTTCTAATGAAAGTTTGTGGTAGTTCTGAGGCCAATCATATACCCCATTTTCCTTCCTTTTTATTAGGAGCAAAACTGTGTTCCCAAGATCCCAACCATGCCCATGATGGCATTAAATTATCACGGAAAGTGATTGATCTAGCCAAGCATCAATGTGGGCACTTTCAGGGTCAAGGTCACAGATTTCTTGGTGTTTGCTATGGGGCTGCGGCTAGAATTTCTCTACTGGATTCTGAAAGAGTTATATGTCAAAGAGAGTCTTTGAATTCGTTAAACCAAGCTGCTGTAATTGGAAATTGGGACCCTGAAGTGATATTCAGCCTTGGTTTGGAAAATGCAGTTCAAAGAAATCTGGGGGCAGCCTATGAGAACGGAGTGATGTACTCAGATATGCTTGTTGGTAGCTCAGGAAAAGGTTGGCAACTGTTAGCACTCATAGTATCTGCACAGCATCGGTTCAAGGATGCTGAGACTGTAGTTGATTTTGCTTTAGATGAATCTGGAAGGACGGATCAATTACAACTTTTAAGATTGAAAGCCGTGCTTCAAATTACTCAGCAGCAACCTAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCACTGATTCAAGCACGAAAGGATTTTTGGCTTGAATATAAGAACATCGATCCCTCAAACACGTTGAGACATGAGGAATTAACAGAAAAAAAATTGGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCCGATCTAGGTGCCTTGCTAGATGCAAAAACTTGTGTAGACAAATCCCAGTTGATAGAATTCTTTTCTCCCAGAAGTTGGCATGTTACAGGGAAACTGTTTGAAGCTAAATCATTGTACAAGGAGGCCATTGTTTCTTTCACAATTGCTTTGTCGATAGAACCTGATTATGTTCCCAGCATCATTTCAACTGCAGAATTGTTGTTAAAAGCTGGTATGAAATCACTTCCAATCGCTAGAAGCTTTTTAATGAATGCTCTGCGGTTGGAACCCACAAACCATGATGCGTGGTTCAACCTTGGATTGGTTTCAAAAATGGATGGTTCATTGCAGCAAGCGGCAGATTTCTTCCAAGCTGCATATGAGCTAAAGTTTTCAGCTCCAGTAGAAAGATTTATGGGAGTAATTGAGACTTCGAGATGA 2262 0.4315 MASKSTWRTLRSGFVAFFVRERSKLLRLFSKMLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTGDWESKFDDTQVDEAESILKEALSLNYEEARALLGRLEFQRGNFDAALQVFQGIDIKGLTPRMIRAISERTKQRKPRSKADHVLPCIMSMHSVSLLLEAILLKTKSLEALARYTEAAKECKIILDMVDSALPAGMPQGFGEDCKLQEMFHRALELLPKLWTSAGLLDEAITAYRRALIKPWNLEQQRLATVQKDLAVTLLYGGVEISLSPHLHVWGVTTPNTNIEEAVLLLLILMGKIALQEIEWDSELLDHLTFALSITGMFESLADHFEQILPGVYSRAERWYFLALCYSAAGQNETALNLLMKVCGSSEANHIPHFPSFLLGAKLCSQDPNHAHDGIKLSRKVIDLAKHQCGHFQGQGHRFLGVCYGAAARISLLDSERVICQRESLNSLNQAAVIGNWDPEVIFSLGLENAVQRNLGAAYENGVMYSDMLVGSSGKGWQLLALIVSAQHRFKDAETVVDFALDESGRTDQLQLLRLKAVLQITQQQPKQAIETYRILLALIQARKDFWLEYKNIDPSNTLRHEELTEKKLEMEAWQDLATIYADLGALLDAKTCVDKSQLIEFFSPRSWHVTGKLFEAKSLYKEAIVSFTIALSIEPDYVPSIISTAELLLKAGMKSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMDGSLQQAADFFQAAYELKFSAPVERFMGVIETSR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1260 753 MobiDBLite consensus disorder prediction 52 68 - -
Lele27g1260 753 Gene3D Tetratricopeptide repeat domain 632 736 IPR011990 GO:0005515
Lele27g1260 753 ProSiteProfiles TPR repeat profile. 637 670 IPR019734 GO:0005515
Lele27g1260 753 SMART tpr_5 637 670 IPR019734 GO:0005515
Lele27g1260 753 SMART tpr_5 542 575 IPR019734 GO:0005515
Lele27g1260 753 SMART tpr_5 707 740 IPR019734 GO:0005515
Lele27g1260 753 SMART tpr_5 348 381 IPR019734 GO:0005515
Lele27g1260 753 Gene3D Tetratricopeptide repeat domain 63 270 IPR011990 GO:0005515
Lele27g1260 753 Pfam Tetratricopeptide repeat 77 120 - -
Lele27g1260 753 PANTHER PROTEIN NPG1 32 745 IPR043376 -
Lele27g1260 753 MobiDBLite consensus disorder prediction 43 69 - -
Lele27g1260 753 SUPERFAMILY TPR-like 598 737 IPR011990 GO:0005515
Lele27g1260 753 SUPERFAMILY TPR-like 77 370 IPR011990 GO:0005515
Lele27g1260 753 Gene3D Tetratricopeptide repeat domain 303 631 IPR011990 GO:0005515
Lele27g1260 753 ProSiteProfiles TPR repeat profile. 707 740 IPR019734 GO:0005515
Lele27g1260 753 SUPERFAMILY TPR-like 337 582 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1260 Lele-ChrLele27 19419739 19423376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1260 32 746 Calmodulin-binding Proteins AT1G27460 59.249 0.0 854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0815 01 4720555 4731244 Lele27g1260 27 19419739 19423376 CCT
Lele02g0786 02 4807814 4811707 Lele27g1260 27 19419739 19423376 CCT
Lele03g0805 03 4720593 4724580 Lele27g1260 27 19419739 19423376 CCT
Lele04g0804 04 4941508 4951984 Lele27g1260 27 19419739 19423376 CCT
Lele25g0818 25 5264909 5267669 Lele27g1260 27 19419739 19423376 hybridization
Lele26g0830 26 5326974 5330059 Lele27g1260 27 19419739 19423376 hybridization