Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele27g1255 | ATGCGAAGCTACATAGATTTGCCTTTACTTGCCTGCGAGGTAGAGAAGGCTCAGATGGAGACTTATCTGAATGAGAACTTTGGGGACGTGAAGCCTAAGAACTCCTCGGAGGAAGCGCTTCAGCGATGGAGAAAACTTTGTTGGCTTGTGAAAAACCGTAAGAGGAGATTTCGCTTCATTGCCAATCTCTCCAAACGATTCGAAGCCGAAGCTATAAGACGCTCTAATCAGGAGAAGTTCCGAGTTGCAGTCTTGGTTTCACAAGCTGCACTTCAGTTTATACATGGTCTAAAATTGTCAAGTGAATACACTGTACCAGAAGAAGTTAGAGCTGCAGGTTTTGAAATTTGTGCTGATGAGTTGGGATCAGTTGTTGAAGGTCGTGATGTCAAGAAGCTAAAAATTCATGGAGGGGTTGAGGTTATTTCGAACAAGCTCGCTACCTCTTTGGATGAGGGGTTATTGACATCTGAGCAATTAGTAAATCAGAGGAAAGAGATTTATGGAATTAATAGATTCATTGAAAGCCCCGCCCGTGGGTTTTGGATTCTTGTTTGGGAAGCCCTTCAAGATACAACCCTCTTGATACTTGCTGTTTGCGCCTTAGTCTCTTTGTTGGTTGGCATAATAATGGAAGGATGGCCTAAGGGCGCGCATGATGGAATCGGTATTGTTGCAAGCATATTGCTTGTTGTGTTAGTCACTGCCACAAGTGATTATAGACAATCATTACAGTTTAAAGATCTAGATAGGGAGAAGAAAAAGATTACAGTTCAGGTCACACGAAATGGATGCAGACAGAAGATTTCAATATATGATTTGCTTGCTGGTGATATTGTCCACCTAAATATTGGAGATCAGGATGGATCTTGCAGGATGCTTGTAACTACTGTTGGAATGAGAACACAGTGGGGAAAACTAATGGCCACTCTAAGTGAAGGGGGAGATGATGAAACTCCCTTGCAGGTCAAGCTCAATGGTGTAGCTACCATTATTGGAAAAATAGGCCTTTTCTTTGCTGTTGTGACGTTTAGTGTTTTGGTCCAAGGACTGTTTAGTCGCAAACTACAAGAACGGTCCCATTGGAAGTGGTCTAGTGGCGATGCTAGGGAAATTTTGGAATTCTTTGCTGTTGCTGTTACTATTGTTGTTGTTGCGGTTCCTGAAGGTTTACCCTTAGCTGTAACGGTGAGCCTTGCTTTTGCTATGAAAAAGATGATGAGTGATAAGGCTCTTGTCCGTCATCTGGCTGCTTGTGAAACAATGGGATCTGCCACTACTATTTGTAGTGATAAGACTGGCACTCTCACCACTAACCATATGACTGTTGTGAAAGCTTGCATATGTAGGAAGATAAACGATGTAGGTAGCTCTAAAATCTCTTCTGAATTCTTGACTGATGTTCCTGATTCTGGTCTGAGAATTCTACTTCAATCACTATTTAACAACACTGGAGGAGAAGTTGTCAAAGACAAAAATGACAAGATTGAGATTCTGGGAACACCAACTGAGAGTGCACTATTAGACTTTGGGCTATCCCTTGGTGGTGATTTCCTTCAGGAACGACAAATGTCAAAAATTGTGAAAGTAGAACCCTTTAACTCTATAAAGAAGTGCATGGGAGTGGTTCTAGAGCTTCCTGATGGTAGCTTCAGAGCACACTGCAAAGGTGCTTCTGAGATAACTCTTACTAAATGTGACAAGTTTATAGACTCTAGTGGCAAAGTCGTTCCACTTGATGAAGAATCCATCAATGAGTTGAATAATACAATTGAAAAATTTGCCAGCGAAGCTCTGCGAACTATTTGCCTTGCTTACATGGATATTGGAAGAGAATACTCTGTTGAAAGTGCTATTCCTAGTAGTGGGTACACATGTATAGGAATTGTGGGGATCAAAGATCCAGTTCGCCCTGGTGTTCGAGAGTCTGTTGCCATTTGCAGGGCAGCTGGAATTACAGTTAGAATGGTTACTGGAGATAACATAAATACTGCCAAGGCCATTGCTAGAGAATGTGGAATTCTAACTGATGGCATAGCAATTGAAGGTCCTGAGTTCCGGGAGAAGAATGCCCAAGCATTGCATGATTTAATTCCCAAAATTCAGGTAATGGCTCGATCTTCACCCATGGATAAGCATACCCTAGTGAAACACTTAAGGACCACATTTGAAGACGTAGTTGCAGTTACTGGTGACGGTACAAATGATGCTCCTGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTAGCGAAAGAAAGTGCGGATGTAATAATACTAGATGATAACTTTTCCACTATTGTGACTGTGGCCAAATGGGGTCGGTCAGTGTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAATGTTGTTGCTTTGATTGTCAACTTCTCTTCTGCCTGTTTGACTGGAAATGCTCCCCTCACTGCTGTCCAACTTCTATGGGTCAACATGATCATGGACACTTTAGGAGCGCTTGCGCTGGCAACTGAACCTCCTAATGATGACTTGATGAAAAGGCCACCTGTTGGTAGGAAAGGAAACTTTATCAGTAATGTGATGTGGAGGAATATCTTGGGACAGGCTTTATATCAGTTTACTATAATCTGGTTCCTCCAGACCAGAGGAAAAGTAGCTTTTCATCTGGAAGGCCCGGATGCTGATTTGACATTGAACACGCTCATTTTCAACTCGTTTGTATTTTGTCAGGTTTTCAATGAGATCAGTTCCAGAGAGATGGAGAAGATAAATGTCTTTGAGGGTATACTGAAGAATTATGTATTTGTGGCTGTCCTCACTTGCACTGTCCTCTTTCAAATTATAATTGTCGAGTTCTTGGGCACGTTTGCAAGCACATCTCCCCTTAGTTGGAAGCAGTGGGTTGGTAGTGTTCTATTTGGATTTCTGGGAATGCCAATTGCGGCAGCTTTAAAGATGATCCCCGTGTGA | 2976 | 0.422 | MRSYIDLPLLACEVEKAQMETYLNENFGDVKPKNSSEEALQRWRKLCWLVKNRKRRFRFIANLSKRFEAEAIRRSNQEKFRVAVLVSQAALQFIHGLKLSSEYTVPEEVRAAGFEICADELGSVVEGRDVKKLKIHGGVEVISNKLATSLDEGLLTSEQLVNQRKEIYGINRFIESPARGFWILVWEALQDTTLLILAVCALVSLLVGIIMEGWPKGAHDGIGIVASILLVVLVTATSDYRQSLQFKDLDREKKKITVQVTRNGCRQKISIYDLLAGDIVHLNIGDQDGSCRMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLQERSHWKWSSGDAREILEFFAVAVTIVVVAVPEGLPLAVTVSLAFAMKKMMSDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICRKINDVGSSKISSEFLTDVPDSGLRILLQSLFNNTGGEVVKDKNDKIEILGTPTESALLDFGLSLGGDFLQERQMSKIVKVEPFNSIKKCMGVVLELPDGSFRAHCKGASEITLTKCDKFIDSSGKVVPLDEESINELNNTIEKFASEALRTICLAYMDIGREYSVESAIPSSGYTCIGIVGIKDPVRPGVRESVAICRAAGITVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREKNAQALHDLIPKIQVMARSSPMDKHTLVKHLRTTFEDVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRPPVGRKGNFISNVMWRNILGQALYQFTIIWFLQTRGKVAFHLEGPDADLTLNTLIFNSFVFCQVFNEISSREMEKINVFEGILKNYVFVAVLTCTVLFQIIIVEFLGTFASTSPLSWKQWVGSVLFGFLGMPIAAALKMIPV | 991 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele27g1255 | 991 | Gene3D | - | 439 | 635 | IPR023299 | GO:0000166 | |
| Lele27g1255 | 991 | Gene3D | - | 288 | 312 | - | - | |
| Lele27g1255 | 991 | Pfam | Cation transporter/ATPase, N-terminus | 137 | 204 | IPR004014 | - | |
| Lele27g1255 | 991 | Gene3D | - | 35 | 95 | - | - | |
| Lele27g1255 | 991 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 288 | 991 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Lele27g1255 | 991 | FunFam | Calcium-transporting ATPase | 439 | 635 | - | - | |
| Lele27g1255 | 991 | FunFam | Calcium-transporting ATPase | 35 | 95 | - | - | |
| Lele27g1255 | 991 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 23 | 67 | IPR024750 | GO:0005516 | |
| Lele27g1255 | 991 | SFLD | p-type atpase | 411 | 782 | IPR044492 | - | |
| Lele27g1255 | 991 | PRINTS | H+-transporting ATPase (proton pump) signature | 730 | 746 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Lele27g1255 | 991 | PRINTS | H+-transporting ATPase (proton pump) signature | 587 | 605 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Lele27g1255 | 991 | PRINTS | H+-transporting ATPase (proton pump) signature | 762 | 787 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Lele27g1255 | 991 | SFLD | C1.7: P-type atpase like | 411 | 782 | - | - | |
| Lele27g1255 | 991 | FunFam | Calcium-transporting ATPase | 624 | 775 | - | - | |
| Lele27g1255 | 991 | Pfam | Cation transporting ATPase, C-terminus | 815 | 989 | IPR006068 | - | |
| Lele27g1255 | 991 | FunFam | Calcium-transporting ATPase | 747 | 991 | - | - | |
| Lele27g1255 | 991 | Gene3D | - | 426 | 775 | IPR023214 | - | |
| Lele27g1255 | 991 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 435 | 640 | IPR023299 | GO:0000166 | |
| Lele27g1255 | 991 | Pfam | haloacid dehalogenase-like hydrolase | 627 | 744 | - | - | |
| Lele27g1255 | 991 | Pfam | E1-E2 ATPase | 288 | 407 | - | - | |
| Lele27g1255 | 991 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 431 | 437 | IPR018303 | - | |
| Lele27g1255 | 991 | Gene3D | - | 313 | 989 | - | - | |
| Lele27g1255 | 991 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 370 | 451 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Lele27g1255 | 991 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 701 | 811 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Lele27g1255 | 991 | SUPERFAMILY | HAD-like | 427 | 835 | IPR036412 | - | |
| Lele27g1255 | 991 | PANTHER | CATION TRANSPORTING ATPASE | 103 | 287 | - | - | |
| Lele27g1255 | 991 | Gene3D | - | 157 | 287 | - | - | |
| Lele27g1255 | 991 | Pfam | Cation transport ATPase (P-type) | 490 | 568 | - | - | |
| Lele27g1255 | 991 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 138 | 990 | IPR023298 | - | |
| Lele27g1255 | 991 | Gene3D | - | 187 | 242 | - | - | |
| Lele27g1255 | 991 | SMART | Cation_ATPase_N_a_2 | 135 | 209 | IPR004014 | - | |
| Lele27g1255 | 991 | PRINTS | P-type cation-transporting ATPase superfamily signature | 650 | 660 | - | - | |
| Lele27g1255 | 991 | PRINTS | P-type cation-transporting ATPase superfamily signature | 429 | 443 | - | - | |
| Lele27g1255 | 991 | PRINTS | P-type cation-transporting ATPase superfamily signature | 730 | 749 | - | - | |
| Lele27g1255 | 991 | PRINTS | P-type cation-transporting ATPase superfamily signature | 151 | 165 | - | - | |
| Lele27g1255 | 991 | PRINTS | P-type cation-transporting ATPase superfamily signature | 628 | 639 | - | - | |
| Lele27g1255 | 991 | PRINTS | P-type cation-transporting ATPase superfamily signature | 754 | 766 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele27g1255 | Lele-ChrLele27 | 19391035 | 19396262 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele27g1255 | 19 | 991 | Primary Pumps ATPases | AT1G27770 | 76.991 | 0.0 | 1586 |