Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1249 ATGGCTCTGGAAGCTCTCAAGTCACCCACCGCCGCTCCTCCTTCCTTCCCTTTCGAATTGGACTCCAATCCTCATTCCTTGGAGTCATGGACTAAGCGCAAGCGTTCCAAGCGTCCCCGTCTCGACAATCCTTCCTCATGCACTTCCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGTGGCTCCGCCGTCTCCCCCACCAATCACGCCGCCTCCTACCGTCATGGCTCCCCTCAGGATAATCTTCTCCCTGCTGTATCTGAGTCGGCGCCGCTATCCACACCAGATCCAACCACCGCCCCCAAGCTCAGTTACAAATGCTCTGTTTGCGACAAGGCTTTCTCCTCTTACCAGGCTCTCGGAGGACACAAGGCCAGTCACAGAAAACTCTCTGCGGGCGGCGCTCCCGGGGAAGATCAATCCACCTCCTCCGCCGTCACAAGTACTTCTGCAAACACCACCACAACTGCGTCCAGCACGGGGGGTAAGTCCCACGAGTGTTCTATCTGCCACAAGTCCTTCCCCACCGGACAAGCCCTGGGAGGTCACAAGCGCTGTCACTACGACGGTGCTGCTGCCGCTGCCACTACCGCTGGAGGCGGGAGCAGCGCTGTTACTGCCTCGGAAGGAGTTGGATCCACCCATACCGTTACCCACAGCCAACGTGACTTCGACCTGAACCTTCCCGCTTTGCCCGACTTCTCGGCTAAGGTCTTCGCTCATGGGGACGACGAAGTGGAGAGCCCTTTGCCGGTGAAGAAACCGCGTCTTTTGATGGCACCCAAAATCGAAGAAGCTCACTGA 816 0.5833 MALEALKSPTAAPPSFPFELDSNPHSLESWTKRKRSKRPRLDNPSSCTSEEEYLALCLIMLARGGSAVSPTNHAASYRHGSPQDNLLPAVSESAPLSTPDPTTAPKLSYKCSVCDKAFSSYQALGGHKASHRKLSAGGAPGEDQSTSSAVTSTSANTTTTASSTGGKSHECSICHKSFPTGQALGGHKRCHYDGAAAAATTAGGGSSAVTASEGVGSTHTVTHSQRDFDLNLPALPDFSAKVFAHGDDEVESPLPVKKPRLLMAPKIEEAH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1249 271 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 31 236 IPR044653 GO:0003700
Lele27g1249 271 Gene3D Classic Zinc Finger 106 191 - -
Lele27g1249 271 MobiDBLite consensus disorder prediction 131 169 - -
Lele27g1249 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 191 IPR013087 -
Lele27g1249 271 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Lele27g1249 271 MobiDBLite consensus disorder prediction 140 169 - -
Lele27g1249 271 MobiDBLite consensus disorder prediction 86 104 - -
Lele27g1249 271 MobiDBLite consensus disorder prediction 1 48 - -
Lele27g1249 271 Pfam C2H2-type zinc finger 169 193 - -
Lele27g1249 271 Pfam C2H2-type zinc finger 109 133 - -
Lele27g1249 271 MobiDBLite consensus disorder prediction 69 104 - -
Lele27g1249 271 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Lele27g1249 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Lele27g1249 271 SUPERFAMILY beta-beta-alpha zinc fingers 109 191 IPR036236 -
Lele27g1249 271 SMART c2h2final6 169 191 IPR013087 -
Lele27g1249 271 SMART c2h2final6 109 131 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1249 Lele-ChrLele27 19335923 19336738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1249 1 268 C2H2 Transcription Factor Family AT1G27730 50.365 1.30e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele27g1249 zf-C2H2_6 1.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0830 25 5346929 5347699 Lele27g1249 27 19335923 19336738 hybridization
Lele26g0841 26 5424899 5425714 Lele27g1249 27 19335923 19336738 hybridization