LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g1230	ATGCCCCGCGTCACATCTTGTGTTGAGTTCAGTCACTTAGCACACCCATATGGCAGCCCCATGGTTAATGCACGTTCAGGCTCCTATGAAGACGCAAGGACCATGGGGAGTATTTTGGACGGTAATGGAAAGGAAGAACCACGCAGTTTTAGCAAGTTGCCAAGTTGAAGCAGTAAAGAAAAAGATAAAGGAGAAAGACAGAAACTACTTTCTACTACAGGGTTCCAAAGGTTCCCCTATTCAGAACTCAAAAAGGCCACACGTGGATTCAGAGATGAGGTTGGAAGAGGAGCAGGAGGGATCGTGTACAAAGGGACATTAGACGATAATCGCGTTGCAGCAATCAAGTGCCTTATTAACGAAACTAATCAAGGAAAAGCAGAGTTTCTGGCAGAAATTAGCACGATTGGGATGATGAACCACATGAATCTGATAGACATGTGGGGATACTGCGTGGAGGGGAAGCACAGACTGTTAGTGTACGAGTACATGGAGCATGGATCCTTAGCAGAGAATTTCTACTCCAATGCACTTGACTGGAACAAAAGGTTTAATATTGCAGTTGGGACAGCCAAAGGTTTAGCTTATTTGCACGAAGAATGCTTGGAATGGTTTCTACATTGCGATGTGAAGCCTCAAAACATACTGTTGGATTCAGAGTTCCAACCCAAAGTAGCTGGCTTTGGGCTGTCAAAGCTGCTTAATAGGGATGAGCGTGACAATTCTGGGTTTTCAAGAATAAGAGGGACAAGAGGGTACATGGCTCCTGAATGGGTGTACAACCTACGAATAACTTCGAAAGTGGACGTATATAGCTATGGGATTGTGGTGTTGGAAATGATAACTGGGAAAAGTCCAATGGGAATCCATAGCCTAGAAAATGAAGGAGGAATAGATCAACGGAGGTTGGTGACGTGGGTGAAGGAGAAATTGAATGGTGCTCCGGCGAGCGAGCCTTAG	960	0.451	MPRVTSCVEFSHLAHPYGSPMVNARSGSYEDARTMGSILDGNGKEEPRSFSKLPSXSSKEKDKGERQKLLSTTGFQRFPYSELKKATRGFRDEVGRGAGGIVYKGTLDDNRVAAIKCLINETNQGKAEFLAEISTIGMMNHMNLIDMWGYCVEGKHRLLVYEYMEHGSLAENFYSNALDWNKRFNIAVGTAKGLAYLHEECLEWFLHCDVKPQNILLDSEFQPKVAGFGLSKLLNRDERDNSGFSRIRGTRGYMAPEWVYNLRITSKVDVYSYGIVVLEMITGKSPMGIHSLENEGGIDQRRLVTWVKEKLNGAPASEP	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g1230	319	ProSiteProfiles	Protein kinase domain profile.	88	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g1230	319	Pfam	Protein kinase domain	92	302	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g1230	319	FunFam	Protein kinase superfamily protein	164	233	-	-
	Lele27g1230	319	SUPERFAMILY	Protein kinase-like (PK-like)	69	292	IPR011009	-
	Lele27g1230	319	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
	Lele27g1230	319	PANTHER	OS07G0415500 PROTEIN	58	287	-	-
	Lele27g1230	319	FunFam	S-receptor-like serine/threonine-protein kinase	57	163	-	-
	Lele27g1230	319	MobiDBLite	consensus disorder prediction	21	68	-	-
	Lele27g1230	319	ProSitePatterns	Protein kinases ATP-binding region signature.	94	116	IPR017441	GO:0005524
	Lele27g1230	319	SMART	serkin_6	88	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g1230	319	Gene3D	Phosphorylase Kinase; domain 1	52	163	-	-
	Lele27g1230	319	Gene3D	Transferase(Phosphotransferase) domain 1	164	318	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g1230	Lele-ChrLele27	19250577	19253955	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g1230	78	284	Receptor kinase-like Gene Family	AT1G56120	47.170	3.51e-57	196

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Lele27g1230		Pkinase	5e-48	CL0016