Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1212 ATGGAAGAAAGAGACTGTTGTTCGAGGGATTCGACGATCACGACGAGCAGATGCAGCCCGGAGAAGCGGAAGCCACAGAGGCAACACCACAAAGCGGCGAAGGACAAGCCATACAGAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATCAGAGAACCCAACAAGAGGTCAAGGATTTGGCTCGGTTCTTACACCACACCCGTCGCCGCCGCACGCGCATACGACACAGCCGTTTATTACCTCCGAGGCCCTTCTGCCTCCCTCAACTTCCCCGAACAGTTGTTCCAAGACGACAACGCCCTCACCCGCGGTGACATGTCCGCCGATTCCATACGCAAGAAAGCTACCGAAGTCGGCGCCAGAGTCGACGCCCTCCAAACCGCCCTTCAGTCCTCCTCTCCCTCCACCAGTTCTACCCAAACCACCTTCGACAAACCCGACTTGAACGAGTACCCGCAACCCGAAGACTTCGTCGAGGATTAG 492 0.5711 MEERDCCSRDSTITTSRCSPEKRKPQRQHHKAAKDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVYYLRGPSASLNFPEQLFQDDNALTRGDMSADSIRKKATEVGARVDALQTALQSSSPSTSSTQTTFDKPDLNEYPQPEDFVED 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1212 163 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Lele27g1212 163 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Lele27g1212 163 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Lele27g1212 163 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Lele27g1212 163 MobiDBLite consensus disorder prediction 1 37 - -
Lele27g1212 163 MobiDBLite consensus disorder prediction 1 22 - -
Lele27g1212 163 MobiDBLite consensus disorder prediction 130 150 - -
Lele27g1212 163 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Lele27g1212 163 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Lele27g1212 163 MobiDBLite consensus disorder prediction 130 163 - -
Lele27g1212 163 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Lele27g1212 163 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Lele27g1212 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 21 159 - -
Lele27g1212 163 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Lele27g1212 163 MobiDBLite consensus disorder prediction 23 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1212 Lele-ChrLele27 19131403 19131894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1212 10 142 AP2-EREBP Transcription Factor Family AT1G46768 61.029 5.82e-50 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele27g1212 AP2 4.5e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0865 25 5546132 5551790 Lele27g1212 27 19131403 19131894 hybridization
Lele26g0879 26 5623089 5624018 Lele27g1212 27 19131403 19131894 hybridization