Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1206 ATGAGTACACCTCAGTTAAGCTTTCTGGGAGATGTTGGTGCTTGTGGTTGTGAATGCTGTTATGGGTTAAAATTGCATCTCAAGTTGCTTGAGCAGACAATGATTATTGTTCTGAATACATATTCACCCGCATTGTTTAGAGCATCTTTTAGTGCTGCCCCAATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCTGAAACCTTAGAATTCAACTGTGGATCCGCTTCAAGTAATCCTACTGTGGATCAGCAAATTTGCTGGAATAATATGCGGAATCCTGCTGATAACGATAGCGATATACCTGAGTATTTACTTCCTTTGAGCGATATGAACCCTCCATATATGAATTCTATAAACCATGAATGGCAGAATTCAAGTGGATGGAGCTTAGGTGAGCCAAGTTCTAGTAATACCCTGAGTGAAACCAACAATAATCAGCAGAAAAGAGAACTTGGATGGACATCTCCAATTAGTGCAAATGCTGCAGCTGGTCCAAGAGCAGAAGGAAGGCACTTTGAACCATCGATTGTTCTTTCGGCTGACAATGTCAATTCCAGTCCTGGGTATATGCACAACTCCAATTCTCATATGCCACCGGATATCAACTTAAATGCTGGCTTGGCAGATGGTGGTGGTGATAACAGCCAGCATTTGGAGCATCCTAACTTGCACAAATCTAGTGGATCAGTAAATGAGCATGTTCCACCTAGCATTGTTTCTGGTCCTTTTCCTCCTCCTCCTGGAAATAACAACTTCATGTTAGAAGGCACTGATGCTAGGGCCAGCTGTTCTCTAGACGTGCGCCGTGCGTCTTGTAAAAGGAAGGCCATTGAAGAAAATGTTGGACCATCTTTGGACAGTGGAAGTTCTAGTTCTAGTCATCATTTAGAAAGTAGTGCTTGGAACCCCCTTCCAACTCAGGTTAATGCTGGGAGAAGTTTAAGTAGATCTGCTTCATCTGAACAGGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCCCTGAAAACCTTCCTGATTCAAATGATGTAGGGAGAACAGGAAGCTTCCACAGGAATCTCCGTTTGAGGATAAGTCCTTCAAGTCAACAAGATTCAATTCCTCCCCCTGCATTCTCTACTGGGAGCGTGATTAGGCATTCTAGTATGTCAACCTCTTCAATGTCGGAAAGGTTCCCACCTGTTGATAACTCCCTGGACTTGAGGGCAGCACCAATGGTAGATAATATAATTCCTCAAAGCCAGCCCCTTGTGATCCATGTTCCTGCTTTACCAAGGAATATGCAATCATTAAGATGGAATGGTAGTTCTAGCTCAAGCAACAGCCAATCATCAAGCCCACTCCTTTGTGCAGACAGGGATAACCAGCCCCGGGAAGAATCAAACTCAAGAAGTATTTCTAGAAACATTTTTGATCACCCGGTGTTTGTACCTGCAACTGATTTAAGAAATCTTGTTCGAAATCCAACAATTAGAGCTTCAGGTAGTGCGAATTTAAGCATGTCAGGAAATGTTGCTTCTTCTTCACGAGCTGGATCAAATTCAGCTGTCAATCATTCATCTGCTTCAGCGTGGGTTTCTCGTCCTAATCCTCCACAGTATCCACGTAGATTATCTGAATATGTTCGTCGATCATTGTTTTCTCCTCCTTCTGAGACTGCTGGAAGTCAAAATCCAAGCAATAATTATTCTTCTTTGCGCTCTGGTCCTACTGCTTCATCTGAAGCAAGGGTGCCTTCATCTGGGGCTGGTGGCCAAGGACGTCATCCATCACACCCAAGATCTTTGTGGATGGAGAGGCAAGGTGATGCTGAATTTGGAATTCCTTATTCATTGCAAAGTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTCCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGTGGTCTGCGATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAATGGCTGATATTCATGATCGCCACAGGGATATGCGTCTTGATGTTGATAACATGTCGTATGAGGAATTGCTGGCTCTGGAAGAGCGAATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACCATAATGAAACTTCTGAAACAGAAGAAGCACTCAGTTGAAACGGGATCTCAGGTTGAGGCAGAACCGTGCTGTGTCTGTCAGGAGGAGTATAATGACGGAGATGATATTGGAACCCTTGATTGCGGACATGATTACCACAAAGAATGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCGTTTGTAAGACAACGGGCCTGGCGTCGTTAATTGAAGCGGAATTCTCTGGTGCTTTGCTGCCTTGTCTTCTATCTATAGTGTTAGTGAAAGCTTAA 2382 0.4404 MSTPQLSFLGDVGACGCECCYGLKLHLKLLEQTMIIVLNTYSPALFRASFSAAPMQGQRGAIGSLPETLEFNCGSASSNPTVDQQICWNNMRNPADNDSDIPEYLLPLSDMNPPYMNSINHEWQNSSGWSLGEPSSSNTLSETNNNQQKRELGWTSPISANAAAGPRAEGRHFEPSIVLSADNVNSSPGYMHNSNSHMPPDINLNAGLADGGGDNSQHLEHPNLHKSSGSVNEHVPPSIVSGPFPPPPGNNNFMLEGTDARASCSLDVRRASCKRKAIEENVGPSLDSGSSSSSHHLESSAWNPLPTQVNAGRSLSRSASSEQVNARLGLGMGDEAPENLPDSNDVGRTGSFHRNLRLRISPSSQQDSIPPPAFSTGSVIRHSSMSTSSMSERFPPVDNSLDLRAAPMVDNIIPQSQPLVIHVPALPRNMQSLRWNGSSSSSNSQSSSPLLCADRDNQPREESNSRSISRNIFDHPVFVPATDLRNLVRNPTIRASGSANLSMSGNVASSSRAGSNSAVNHSSASAWVSRPNPPQYPRRLSEYVRRSLFSPPSETAGSQNPSNNYSSLRSGPTASSEARVPSSGAGGQGRHPSHPRSLWMERQGDAEFGIPYSLQSLAAGGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETIMKLLKQKKHSVETGSQVEAEPCCVCQEEYNDGDDIGTLDCGHDYHKECIKQWLMHKNLCPVCKTTGLASLIEAEFSGALLPCLLSIVLVKA 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1206 793 MobiDBLite consensus disorder prediction 203 250 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 551 582 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 282 350 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 127 169 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 496 530 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 127 155 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 496 538 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 432 453 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 432 468 - -
Lele27g1206 793 MobiDBLite consensus disorder prediction 284 325 - -
Lele27g1206 793 SMART ring_2 724 764 IPR001841 -
Lele27g1206 793 Pfam Ring finger domain 724 765 IPR001841 -
Lele27g1206 793 MobiDBLite consensus disorder prediction 550 597 - -
Lele27g1206 793 SUPERFAMILY RING/U-box 723 767 - -
Lele27g1206 793 CDD RING-H2_TTC3 723 765 - -
Lele27g1206 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 768 IPR013083 -
Lele27g1206 793 ProSiteProfiles Zinc finger RING-type profile. 724 765 IPR001841 -
Lele27g1206 793 FunFam E3 ubiquitin-protein ligase MBR2 692 769 - -
Lele27g1206 793 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 269 769 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1206 Lele-ChrLele27 19083783 19087627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1206 54 771 C3H Transcription Factor Family AT2G15530 34.088 1.61e-81 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1206 27 19083783 19087627 Lele01g0846 01 4885758 4890800 CCT
Lele27g1206 27 19083783 19087627 Lele02g0823 02 5018610 5022267 CCT
Lele27g1206 27 19083783 19087627 Lele03g0839 03 4905029 4908464 CCT
Lele27g1206 27 19083783 19087627 Lele04g0844 04 5163602 5167247 CCT
Lele01g0861 01 4969567 4972831 Lele27g1206 27 19083783 19087627 CCT
Lele02g0841 02 5113822 5117121 Lele27g1206 27 19083783 19087627 CCT
Lele03g0856 03 4989269 4992533 Lele27g1206 27 19083783 19087627 CCT
Lele04g0858 04 5247846 5251121 Lele27g1206 27 19083783 19087627 CCT
Lele25g0873 25 5585800 5590462 Lele27g1206 27 19083783 19087627 hybridization
Lele26g0885 26 5664529 5669839 Lele27g1206 27 19083783 19087627 hybridization