Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1200 ATGGCTCTGTTATTGGACAATTGTGAGAGCATTCTACTCTCTTTAGACTCCCACAAATCGGTGCCCGCTCCTTTCCTCACCAAGACGTACCAGCTGGTGGATGATCCCGCCACCGATCACATTGTCTCTTGGGGCGAAGACGACACCACCTTTGTCGTTTGGCGTCCTCCTGAGTTCGCCAGGGATCTTCTCCCCAACTACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGTTTTAGGAAGATCGTGCCCGACAGATGGGAGTTCGCGAATGAGTTCTTTAGGAAGGGAGAGAAGCATTTACTCTGCGAGATCCATAGAAGAAAGACGGCTCAGCTTCACAGCCAGCATGTACCCGTTAACCATCCTCCTCATCACCCACCACTTCCGTTGGGACTCAACGTTCCTACTTTCTTTCCCTTCTCCACCACCAGAATCAGCGTCTCTCCGTCCAACGACTCCGATGACCAACCGCCCCATTGGTGTGACTCGCCACCGCTCACTTCTCCACGCGGAGGCACCGGCATGGTGACGCTGTCCGAGGACAACGAAAGACTGAGAAGAAGCAACAACATGCTCATGTCTGAGCTGGCCCACTTGAAAAAACTCTATAACGACATCATCTATTTCGTCCAGAATCATGTCAAGCCCGTGGCTCCCAGCAATTCTTTCTCTTCCTCTTTCCTCCTACCTAATACATGTTCGCCGTCACCGCCCTCTCTTTTGCCTCCTGCTGCTACAAACGTTTCCATGGTGCAAAGGCAAATGAATAAGCTTCTGGGCTATTATTCTACTTCTGCTAACCCTAAGCAAAATACCCCTCAAGTATCTCGTATCGTGAGATCTCCCACCACCTACACATCAAAAAGTTCCGTCTCCATCGTGGAAGAACCCTGCAGCAATAATACTAAGCTTTTTGGCGTGTCCCTTCAATCCAAGAAAAGGGTGCATCCTGACTCTGATTCTATTACTCCGGCCAATTCCGAAATGAACAAGGTTCGATTGGTCTTGGAAAAAGACGATGACCTCGCCTTGAATCTCATGCCACCTTCGGCGTGTTAG 1080 0.5 MALLLDNCESILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKHLLCEIHRRKTAQLHSQHVPVNHPPHHPPLPLGLNVPTFFPFSTTRISVSPSNDSDDQPPHWCDSPPLTSPRGGTGMVTLSEDNERLRRSNNMLMSELAHLKKLYNDIIYFVQNHVKPVAPSNSFSSSFLLPNTCSPSPPSLLPPAATNVSMVQRQMNKLLGYYSTSANPKQNTPQVSRIVRSPTTYTSKSSVSIVEEPCSNNTKLFGVSLQSKKRVHPDSDSITPANSEMNKVRLVLEKDDDLALNLMPPSAC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1200 359 Coils Coil 189 209 - -
Lele27g1200 359 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele27g1200 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 273 IPR027725 -
Lele27g1200 359 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele27g1200 359 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele27g1200 359 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele27g1200 359 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele27g1200 359 Gene3D - 17 116 IPR036388 -
Lele27g1200 359 MobiDBLite consensus disorder prediction 154 179 - -
Lele27g1200 359 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lele27g1200 359 FunFam Heat stress transcription factor B-4 17 115 - -
Lele27g1200 359 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1200 Lele-ChrLele27 19041828 19042992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1200 1 357 HSF AT1G46264 53.213 8.16e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele27g1200 HSF_DNA-bind 3.3e-32 CL0123