Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1199 ATGAACAGAGAAGACCTGTTGAAGTCATCCACTTCGGAGCAGGACAATCAGATGGACACGATGATGATGCAACTTCCCGAATTCTCTGGAACTTACAGCAACGACATCTTTTCCGATGACTTTTCACTTCCTGAGCTCTCCCCGGCCGCTAGGGGGACGACGGACCCCGACATACACGAAACTATGCTGCATTTTTTGGACAACTCTCCTGCCACGTCGTCGTCGTCGTCGTCATTCACGAGTTTACAGTCTACTACAATTTCCTTTACTAACCCTACTCCGATGCTTCAAGAGCGAGATCCAGCTGCTTGCGGTAGAGCATCGGAGAAAGGGATGTCAATGGCCGCGATGAGGGAGATGATATTCAGGATAGCGGTGATGCAGCCGATACACATAGACCCGGAGTCAGTGAAGCCACCAAAGCGGAGGAACGTGAAGATTTCGAAGGATCCTCAGAGCGTGGCGGCTCGCCACCGCAGAGAGAGGATCAGCGAGAGAATAAGGATACTGCAGAGACTGGTTCCGGGAGGGACGAAGATGGACACAGCTTCCATGTTAGACGAAGCCATTCACTATGTGAAATTTCTCCAGACTCAGGTTCAGTCACTCGAACGCGCTGCAGCCAGCAAGCCTACAGGGCTAGGATTCCCTGTGGCCATGTCCACTGCATCTTCCACCTCGTATCTTCCTATCCCATCAAAACCTTACCAGTCTCCTACTCAAAATGTTCCTCGTTTCGGAGATGATGCATAA 753 0.5113 MNREDLLKSSTSEQDNQMDTMMMQLPEFSGTYSNDIFSDDFSLPELSPAARGTTDPDIHETMLHFLDNSPATSSSSSSFTSLQSTTISFTNPTPMLQERDPAACGRASEKGMSMAAMREMIFRIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLQTQVQSLERAAASKPTGLGFPVAMSTASSTSYLPIPSKPYQSPTQNVPRFGDDA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1199 250 Gene3D - 146 212 IPR036638 GO:0046983
Lele27g1199 250 Pfam Helix-loop-helix DNA-binding domain 157 197 IPR011598 GO:0046983
Lele27g1199 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Lele27g1199 250 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 53 236 IPR045843 GO:0003700|GO:0006355
Lele27g1199 250 MobiDBLite consensus disorder prediction 86 110 - -
Lele27g1199 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 206 IPR036638 GO:0046983
Lele27g1199 250 SMART finulus 153 202 IPR011598 GO:0046983
Lele27g1199 250 FunFam BHLH transcription factor 150 213 - -
Lele27g1199 250 MobiDBLite consensus disorder prediction 227 250 - -
Lele27g1199 250 MobiDBLite consensus disorder prediction 227 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1199 Lele-ChrLele27 19032642 19033394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1199 101 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 80.702 4.89e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele27g1199 HLH 4e-07 No_clan