Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1169 ATGTTGGAGAAGCTAGTGTGTAACCTGTTGTTGTGGTTGGGGAATGATTTGCCCCCACCTTCCAAATCCACAACTTGGGGCCATTTTGTCTTCTCACTTGACATCTCCGCCAGACCCGTGATCCTGAGAGATCGTTTTCTGCCTTGCTTCAATAGTACTATTTCCAGTGTTCTACCTTGGGGAATTCTATACCATCCATCAGAAATTACACGAGCTCACGCCGACCTCATCATGTCAAGCAATGCAATAACTCTCTTTATCTTGTTTCTTAATATCTCCTTGTTTCCTTCCGTCTATACTCTGAACCAGGAAGGTCTGTCCCTACTTTCATGGCTTTCAACCTTCAATTCCTCTGATTCTGTTTCTTCCTTCTCTTCATGGAATCCAACCGACAAAACTCCTTGCAAATGGGATTATATAAGATGTTCCAAATATGGGTTTGTTTCAGATATTGTAATAACATCTATCAATCTTCGTAGCAGCTTCCCAACGCAGCTCCTCTCTTTTGGTCACCTCACTACTCTTGTCATCTCAAATGGAAATCTCACTGGTGAGATTCCAAGTTCAGTAGGGAACTTGTCGTCTCTGGTTTTTTTGGACCTCAGCTTCAATGCTTTCTCAGGTACCATTCCTGCAGAAATAGGAAATTTACCTAATCTGCAGTGGTTAAAATTAAATTCAAATTCCTTACATGGTGAAATTCCAACAGAAATTGGGAAGTGTTCCAAGCTTCGTCAGCTGGAATTGTATGACAACCAGCTCTCTGGCAAGATTCCTGGAGAGATAGGCCATTTGAAAGATCTAGAAATGTTTCGAGCAGGTGGAAACCAGGGAATCCATGGTGAAATTCCAATGCAGATTTCAAACTGCAAAGCTCTCACTTTGCTGGGTCTTTCAGATACTGGGATTTCAGGGGAGATTCCATCAAGTATAGTAGAACTTAAGAATCTCAAGACCCTTTCTGTCTACACAGCAAACCTTACAGGTCATATCCCACCAGAGATTCATAATTGCTCAGCCTTGGAGAATTTGTTTCTATATGAAAATCAGCTTTCTGGTAACATTCCTTATGAATTGGGTTCCATGAAAAGCCTACGGAGAGTAATGCTATGGCAGAACAATTTAACTGGCACCATTCCAGAGAGTCTGGGGAACTGTACAAGTCTGGTGGTTGTAGATTTTTCTTTGAATTCCTTGGAAGGTGAGCTCCCTGTGACTCTTAGAAATTTGCTCTTATTGGAAGAGCTTCTTCTCTCTGATAATAACATTTCTGGAGAAATACCTTCCTTTATTGGCAATTTTTCCAGACTGAAGCAGCTTGAATTGGATAACAACAGATTCTCTGGCAAGATTCCACCTGTTATGGGACAGCTGAAAGAACTCACCTTGTTCTTTGCTTGGCAGAACCAACTCTATGGAAGCATACCAACAGAACTATCCAACTGTGAGAAACTTGAGGCAGTTGATCTCTCACACAATTTCCTCACTGGGTCAATTCCAAATTCTCTCTTTCATCTAGAGAACTTAACTCAACTATTGTTGATATCAAATCGACTTTCAGGTCAACTTCCACCAGATATTGGCAGCTGCACCAACTTGGTCAGGCTACGGCTGGGATCAAACAACCTTACTGGTCCAATTCCACCAGAAATAGGTCTTTTAAGCAGATTGAGCTTTCTTGAGTTGTCAGATAATCTAATCAGTGGAGAAATTCCCGACCAAATTGGCAACTGCAATGAGCTACAAATGCTGGACTTGCACAAGAATAAGCTGCAAGGAATAATTCCTTCCTCCTTTGAGTTCCTACTTGTTCTTAATGTCTTAGATCTTTCTACAAACAGAATAACTGGAAGTATTCCACAAAATTTGGGCAAGCTTACATCTTTAAATAAGCTAATAATCAGTGGCAACAGCATTACAGGTTTGATCCCTCAGTCACTGGGCCTTTGTAAGAATCTGCAGTTGCTGGATATTAGCAACAACAGAATCTCTGGTTCCATCCCAGATGAGATTGGCCAATTGCAAGGACTCGATATCCTCTTGAACTTGAGTTGGAACTCTCTAACAGGTCCCATTCCAGAGAGCTTCTCAAATCTCTCAAAACTTTCCAACTTGGACCTCTCCCACAACAGGCTAACAGGCAGCCTCAGAATACTGGGTAGTCTTGACAATTTAGTGTCTTTGAATGTCTCCTACAATAGTTTTTCTGGTTCGCTTCCAGATACAAAGTTCTTTCATGATCTCCCTGCTGCTGCATTTTCTGGTAATCCTGAGCTCTGCATTAGCAGGTGTGACATGAACAGAAATCACCAAGGCATCAAGTCAGTAAGAAATTTTATTATTTACACTTTTCTTGGTGTTATTTTAACAGCTATGTTTGTGACTTTTGGAGTAATTTTTGCTCTGAGAATTCACGGGGCCACTTTTGAGAGGGAATTCGATGAAGAAAGTGAAATGGAATGGACTTTTACTCCATTTCAAAAACTTAACTTCTCCATCAATGACATTGTCACAAAGTTATCAGATTCAAACGTTGTAGGAAAGGGTTGCTCAGGGATTGTTTATCGAGTAGAGACTCCAATGAAACAGATAATTGCAGTGAAGAAGCTCTGGCCAATAAAGAATGACGAGCCACCGGAGAGAGATTTGTTTTCTGCAGAGGTTCAGACCTTGGGATCAATAAGACATAAAAATATAGTCAGGCTTCTAGGATGCTGTGACAATGGAAGAACGAGGTTACTCCTATTTGATTATATCAGCAATGGGAGTTTGTGTGGGTTGCTCCATGAAAAGAGGTTGTTCTTGGATTGGGATGCAAGGTATAAGATCTTACTGGGAGCAGCTCAAGGTTTAGAATATCTGCATCATGATTGTATACCTCCAATTGTCCATAGGGATATTAAGGCTAACAACATCTTGGTAGGACCACAATTTGAAGCTTTCATTGCAGATTTTGGTCTTGCAAAACTGGTGAATTCCTCTGAGTGTTCAAAAGCCTCTGCCATAGTTGCAGGCTCTTATGGGTACATAGCTCCAGAATATGGATACAGCCTAAGGATCACAGAGAAGAGTGATGTGTATAGTTATGGTGTGGTTTTGCTAGAGGTTTTGACAGGGATGGAGCCAACTGATAATAGGATTCCAGATGGAGCCCACATTATCACTTGGGTTAACAGGGAAATCAGAGAGAAGAAAAGGGAATTCACATCAATTCTTGAGCAGCAACTAGTATTGCAATGTGGTACTAGAACGCCGGAGATGCTTCAAGTTCTAGGGGTGGCTCTCTTATGCGTAAATCCATCCCCAGAAGAACGACCCACCATGAAGGATGTAACAGCAATGCTCAAGGAGATCAGGCATGAAACTGACCATTTCGAGAAACAAAGTTTTCTCCAAAAAGGGGCAGTCAACAATCAAAAAGTCGCCGTTCACTGTTCAAGTTTCTCCAGATCATGTCAACCACTAATAGAATCGTCCTCGTCATCATCTTCTTCCTAA 3498 0.4137 MLEKLVCNLLLWLGNDLPPPSKSTTWGHFVFSLDISARPVILRDRFLPCFNSTISSVLPWGILYHPSEITRAHADLIMSSNAITLFILFLNISLFPSVYTLNQEGLSLLSWLSTFNSSDSVSSFSSWNPTDKTPCKWDYIRCSKYGFVSDIVITSINLRSSFPTQLLSFGHLTTLVISNGNLTGEIPSSVGNLSSLVFLDLSFNAFSGTIPAEIGNLPNLQWLKLNSNSLHGEIPTEIGKCSKLRQLELYDNQLSGKIPGEIGHLKDLEMFRAGGNQGIHGEIPMQISNCKALTLLGLSDTGISGEIPSSIVELKNLKTLSVYTANLTGHIPPEIHNCSALENLFLYENQLSGNIPYELGSMKSLRRVMLWQNNLTGTIPESLGNCTSLVVVDFSLNSLEGELPVTLRNLLLLEELLLSDNNISGEIPSFIGNFSRLKQLELDNNRFSGKIPPVMGQLKELTLFFAWQNQLYGSIPTELSNCEKLEAVDLSHNFLTGSIPNSLFHLENLTQLLLISNRLSGQLPPDIGSCTNLVRLRLGSNNLTGPIPPEIGLLSRLSFLELSDNLISGEIPDQIGNCNELQMLDLHKNKLQGIIPSSFEFLLVLNVLDLSTNRITGSIPQNLGKLTSLNKLIISGNSITGLIPQSLGLCKNLQLLDISNNRISGSIPDEIGQLQGLDILLNLSWNSLTGPIPESFSNLSKLSNLDLSHNRLTGSLRILGSLDNLVSLNVSYNSFSGSLPDTKFFHDLPAAAFSGNPELCISRCDMNRNHQGIKSVRNFIIYTFLGVILTAMFVTFGVIFALRIHGATFEREFDEESEMEWTFTPFQKLNFSINDIVTKLSDSNVVGKGCSGIVYRVETPMKQIIAVKKLWPIKNDEPPERDLFSAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYISNGSLCGLLHEKRLFLDWDARYKILLGAAQGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFIADFGLAKLVNSSECSKASAIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPDGAHIITWVNREIREKKREFTSILEQQLVLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHETDHFEKQSFLQKGAVNNQKVAVHCSSFSRSCQPLIESSSSSSSS 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1169 1165 Gene3D Ribonuclease Inhibitor 216 293 IPR032675 -
Lele27g1169 1165 SUPERFAMILY Protein kinase-like (PK-like) 822 1123 IPR011009 -
Lele27g1169 1165 Pfam Leucine Rich Repeat 484 506 IPR001611 GO:0005515
Lele27g1169 1165 Pfam Leucine Rich Repeat 681 699 IPR001611 GO:0005515
Lele27g1169 1165 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 919 1133 - -
Lele27g1169 1165 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 484 768 - -
Lele27g1169 1165 PRINTS Leucine-rich repeat signature 653 666 - -
Lele27g1169 1165 PRINTS Leucine-rich repeat signature 699 712 - -
Lele27g1169 1165 Gene3D Phosphorylase Kinase; domain 1 805 918 - -
Lele27g1169 1165 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 101 276 - -
Lele27g1169 1165 SUPERFAMILY RNI-like 370 737 - -
Lele27g1169 1165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672|GO:0006468
Lele27g1169 1165 Gene3D Ribonuclease Inhibitor 106 215 IPR032675 -
Lele27g1169 1165 SUPERFAMILY L domain-like 115 471 - -
Lele27g1169 1165 ProSiteProfiles Leucine-rich repeat profile. 701 723 IPR001611 GO:0005515
Lele27g1169 1165 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 277 402 - -
Lele27g1169 1165 ProSitePatterns Protein kinases ATP-binding region signature. 846 874 IPR017441 GO:0005524
Lele27g1169 1165 ProSiteProfiles Leucine-rich repeat profile. 652 674 IPR001611 GO:0005515
Lele27g1169 1165 Pfam Protein kinase domain 843 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1169 1165 Pfam Leucine rich repeat N-terminal domain 102 143 IPR013210 -
Lele27g1169 1165 Gene3D Ribonuclease Inhibitor 499 597 IPR032675 -
Lele27g1169 1165 Gene3D Ribonuclease Inhibitor 299 401 IPR032675 -
Lele27g1169 1165 Gene3D Transferase(Phosphotransferase) domain 1 919 1142 - -
Lele27g1169 1165 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 816 918 - -
Lele27g1169 1165 ProSiteProfiles Protein kinase domain profile. 840 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1169 1165 Gene3D Ribonuclease Inhibitor 402 498 IPR032675 -
Lele27g1169 1165 Gene3D Ribonuclease Inhibitor 681 768 IPR032675 -
Lele27g1169 1165 Gene3D Ribonuclease Inhibitor 598 680 IPR032675 -
Lele27g1169 1165 PANTHER UNNAMED PRODUCT 431 1044 - -
Lele27g1169 1165 SMART serkin_6 840 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1169 1165 SMART LRR_typ_2 650 674 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 699 721 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 580 601 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 626 649 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 554 578 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 722 755 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 217 241 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 410 434 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 506 530 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 193 216 IPR003591 -
Lele27g1169 1165 SMART LRR_typ_2 362 386 IPR003591 -
Lele27g1169 1165 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Lele27g1169 1165 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1169 Lele-ChrLele27 18869922 18874834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1169 99 1135 Receptor kinase-like Gene Family AT5G56040 46.863 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele27g1169 Pkinase 3.2e-41 CL0016