Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1168 ATGTTGGGTTGTGAATTCTCTGCTGCTGCTCCTCCTGCCAATAATCCTAAGCCATTCTCCAGGTGGAAGCCCGACCACGTGGAGCCGCCTCCCCCTTGCCCTCGCTGTGCTTCTACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCCCAGCCCAGGTACTTGTGTAAATCTTGCCGTCGCTACTGGACCAAAGGTGGCTTCCTCCGCAACGTCCCCGTGCGCGGTGGTTCCCGTAAATCCCGCCGTACTAAGACCCCCCGGCTCCCACCACCAAACCAGCGTCTTTCCACCGACCATGCTCCTAATAATAACTCGGACAAAGTCTCCGAGGCTGACAGGTCCCGGGCCAAAGGATCCGATATTGACATGGCCGCGGTCTTTACTAATTACTTGAGCTCATCAGGTCATGATTCCAATACCGAGAACGATGCGCCTCAGCCGTCGGATCCGGTGGTAGAGGGTAAGGGGCTTCTGCCTCAAGAGGAGTCGGTGATAAGTGGGATTGAGCTGGAGTGGGAGAGCTTGTTAGGTGGTGGTGATGGAGAAGTGGTCCAGGATGTTTTCTGCTTGTCCGATCCTGCCACATCGTCCTCGTCGTCTGTCATATGGCAACCACCTCTGATGCAGTTGCAGGAGGAGTTGGAGAATCCCTTGCCCTTCAACCATGATGAGGTTGCTCAACTACCTATAGCCGATTCCTGGAATTGGAATTCCTTCGATTTTCCTACTTTGCAGGAATTCTCATCAAGCTAG 762 0.5341 MLGCEFSAAAPPANNPKPFSRWKPDHVEPPPPCPRCASTNTKFCYYNNYSLSQPRYLCKSCRRYWTKGGFLRNVPVRGGSRKSRRTKTPRLPPPNQRLSTDHAPNNNSDKVSEADRSRAKGSDIDMAAVFTNYLSSSGHDSNTENDAPQPSDPVVEGKGLLPQEESVISGIELEWESLLGGGDGEVVQDVFCLSDPATSSSSSVIWQPPLMQLQEELENPLPFNHDEVAQLPIADSWNWNSFDFPTLQEFSSS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1168 253 MobiDBLite consensus disorder prediction 135 149 - -
Lele27g1168 253 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Lele27g1168 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 149 IPR045174 GO:0003700|GO:0006355
Lele27g1168 253 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Lele27g1168 253 MobiDBLite consensus disorder prediction 135 157 - -
Lele27g1168 253 MobiDBLite consensus disorder prediction 108 122 - -
Lele27g1168 253 MobiDBLite consensus disorder prediction 75 122 - -
Lele27g1168 253 Pfam Dof domain, zinc finger 32 85 IPR003851 GO:0003677|GO:0006355
Lele27g1168 253 MobiDBLite consensus disorder prediction 89 107 - -
Lele27g1168 253 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1168 Lele-ChrLele27 18865584 18866345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1168 21 148 C2C2-Dof Transcription Factor Family AT1G21340 46.324 8.78e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele27g1168 zf-Dof 4e-30 No_clan