Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1161 ATGGAACACAGTATCCTCTGCAAATACACTGTCCACGAAAGTGTCTCTAAGAAGTACACCAAGCCGGTGGCGGCCAACAGGGCTTCCGATGTTCACAGTCCCATAGAGCCCAGAGTGGTACGGATATCCGTCACCGATCCAGACGCCACTGACTCCTCCAGCGATGAGGAAGGAGAGTTCTGCTTTGGTCGACAGAGAGTGAAGCGTTATGTGAACCAGGTTAACATCGAGCCAAGCTGCAAGAGCTCGGTGCCTTCCAATCCGCGAAAGAGGCCCGCCAGAGCAACTCAAGCATGCCAGCGGCCGGTGAAGGTTACTTCTACCAATAACGGAAGGAAGTTCCGAGGAGTACGACAGAGACCTTGGGGTAAATGGGCGGCGGAGATTCGAGATCCCGCTCGCCGCGTACGCGTGTGGTTAGGCACCTTTGACACTGCAGAGGAAGCAGCTATGGTTTATGATAATGCAGCGATTAAGATACGGGGACCAGACGCTTTGACAAACTTCGTGACCCCACCGCCGAGGGAAAAGCCGGAAGAAACAGAGGTGGCGGTGAAGCGGGAAATCAATGTGGTGGTGAAGTCGGAAGCGTCGGGCTACGATTCCGGCGACGAATCACACCGTCTACCGTCTCCCACTTCTGTGCTGCAATTCAGAACCAATTGCAGCGAAGAGACCGAACCGCAGAAGGCAAGCGAACCGGAGAAAGAAAGCGAGGCCGAGACGAAGGCAGCCGAAGTGGAAGACGTGTTCCGGGAGTGTGAAGGCGAAACGAGTCTGTCAGACGAGAGGGCAGACTATTTCGGGTTCGACATGCCAAAGGAGGAGGATTACTTCGGGTTCGAAATGCCAAATTGGGAGCAAGTGTTGGATTTCTCGACTCTAGAACCGGAGTACTCATTACTGTTCGAAGAACCTCCTCCGTTCCTTGGGGAGACGACGGCGATGTTGGCAGAGGAAGATTTCAGAGTGGACGACACGATCGTGGGGGAGTCAGAGTTGGAGTTGGAGAAATCATTCTCGCCGTCGACGTTGTGCCAAATGGACGATTACTTTCAAGATATATTGTCGGGTCCGGACCCTCTGGTGGTGCTGTGA 1098 0.541 MEHSILCKYTVHESVSKKYTKPVAANRASDVHSPIEPRVVRISVTDPDATDSSSDEEGEFCFGRQRVKRYVNQVNIEPSCKSSVPSNPRKRPARATQACQRPVKVTSTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDALTNFVTPPPREKPEETEVAVKREINVVVKSEASGYDSGDESHRLPSPTSVLQFRTNCSEETEPQKASEPEKESEAETKAAEVEDVFRECEGETSLSDERADYFGFDMPKEEDYFGFEMPNWEQVLDFSTLEPEYSLLFEEPPPFLGETTAMLAEEDFRVDDTIVGESELELEKSFSPSTLCQMDDYFQDILSGPDPLVVL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1161 365 MobiDBLite consensus disorder prediction 80 101 - -
Lele27g1161 365 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Lele27g1161 365 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Lele27g1161 365 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Lele27g1161 365 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Lele27g1161 365 Coils Coil 365 365 - -
Lele27g1161 365 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Lele27g1161 365 MobiDBLite consensus disorder prediction 196 215 - -
Lele27g1161 365 CDD AP2 113 169 IPR001471 GO:0003700|GO:0006355
Lele27g1161 365 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 260 - -
Lele27g1161 365 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Lele27g1161 365 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Lele27g1161 365 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Lele27g1161 365 MobiDBLite consensus disorder prediction 226 245 - -
Lele27g1161 365 MobiDBLite consensus disorder prediction 220 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1161 Lele-ChrLele27 18817754 18818851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1161 7 285 AP2-EREBP Transcription Factor Family AT4G27950 45.361 5.45e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele27g1161 AP2 4.3e-14 CL0081