Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1156 ATGGACGACGGCTTCTCTGATATTTTTGAAGACAAAGACTTGGACTTGGGTGGAGACGATCTGCTTGCCCTTTTGGACTCCCTCGAGGACTTGACCAACTTCCCTCCCGTAGAAGAATCCCTTACCGTTACCTCAAAAGAGAATAACGATGAAACCACAAGCGCTCTTCAATCTGATGCTTCACCAACTCAGCTTGAAACTACAACCCACAAAAACAAGAGACAGAAGCTTTCGGAGTCTTCTGAAGAACCTAAGATATCTCATATCACTGTGGAGCGCAACCGAAGAAAGCAGATGAACGAGAACTTGTCCGTCTTGAGATCCCTCATGCCTTGCTTCTATTTCAAACGAGGCGATCAAGCATCAATAATAGGAGGAGCGGCGGAGTACATCAATGAGTTGCAGCAACTTCTGCAATCCCTGGTAGCGAAGAAACAGAGAAAGGTGTATAATGAAGTTCTGAGCCCTAGGCTGGGGTCAAGCCCAAGGGTTTCTCCTAGAGTGACGATTCCGCCGGTAAGCCCGAGGTTAAACCTACCGATTAGCCCAGGAACACCACAGCCAGGTAGCCCCTACAAGCCCCAACCCAGATTGTCCACCTCTCTGGAACCATCTCCCACATCTTCTGTTTCTTCCTCCATCAACGACAATATCAACGAGCTCGTCGCAAACTCCAAGTCCCCCATCGCCGACGTGGAGGTTAAGTTCTCCGGGCCCCACGTACTCTTAAAAACTCTATCTCCACCAATCCCTGGACAAGCTTTAAAAATCATCTCCACTCTTGAAGATCTGGCCCTCGAAGTCCTTCAGGTCACCATCACCGCTGCTGAAGAAAGCGTGCTTAACTCATTCACCATAAAGATTGGAGTTGAATGTCAGCTCAGTGCCGAGGATTTGGCTCAACAAGTCCAGCAAACTTTCTCGCCACACGGGCTTCTCTCGTGA 945 0.4899 MDDGFSDIFEDKDLDLGGDDLLALLDSLEDLTNFPPVEESLTVTSKENNDETTSALQSDASPTQLETTTHKNKRQKLSESSEEPKISHITVERNRRKQMNENLSVLRSLMPCFYFKRGDQASIIGGAAEYINELQQLLQSLVAKKQRKVYNEVLSPRLGSSPRVSPRVTIPPVSPRLNLPISPGTPQPGSPYKPQPRLSTSLEPSPTSSVSSSINDNINELVANSKSPIADVEVKFSGPHVLLKTLSPPIPGQALKIISTLEDLALEVLQVTITAAEESVLNSFTIKIGVECQLSAEDLAQQVQQTFSPHGLLS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1156 314 Coils Coil 127 147 - -
Lele27g1156 314 Pfam Helix-loop-helix DNA-binding domain 85 135 IPR011598 GO:0046983
Lele27g1156 314 MobiDBLite consensus disorder prediction 37 68 - -
Lele27g1156 314 MobiDBLite consensus disorder prediction 35 87 - -
Lele27g1156 314 Gene3D - 69 149 IPR036638 GO:0046983
Lele27g1156 314 PANTHER TRANSCRIPTION FACTOR FAMA 19 307 IPR044283 GO:0003700|GO:0010052
Lele27g1156 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 150 IPR036638 GO:0046983
Lele27g1156 314 MobiDBLite consensus disorder prediction 176 193 - -
Lele27g1156 314 MobiDBLite consensus disorder prediction 69 87 - -
Lele27g1156 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 134 IPR011598 GO:0046983
Lele27g1156 314 MobiDBLite consensus disorder prediction 156 213 - -
Lele27g1156 314 SMART finulus 89 140 IPR011598 GO:0046983
Lele27g1156 314 MobiDBLite consensus disorder prediction 194 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1156 Lele-ChrLele27 18788305 18789812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1156 5 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 47.965 1.22e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele27g1156 HLH 2.9e-09 No_clan