Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1130 ATGACATTGCAGCACCTGAGCAAGGCCTTCTATTCCTCTACCACCATCTCCAACGTCCAGATGGATCAGCGTCAACGGTCGGCTTATGAGGACTGCCTCGAACTCCTCGAGGATTCCGTCGACGCGCTCATGCGCTCCCTCACCTCCGTCGTCCCAGGCGGCGGCGGCGGGTCCACTGATGATGTGCTGACGTGGCTCAGCGCCTCACTCACGAATCAAGACACGTGCAGTGAAGGGTTCGCGGACACGAGCGGGACAGTGAAGGATCAGATGGCCAGTAACTTGAAGGACTTATCGGAGCTCATTAACAACTGTCTGGCGATATACGCCGGGAACGATTTCTCAGGGATTCCGATACAGAACAGGAGAAGATTAATGGGAGATAATGACAATGGAGATATCTCATCAGGCGAATTCCCGACCTGGTTAAGCAAAAGAGACAGAAGCTTATTGAGCACGCCAGCGCCGGCAATGCAAGCTGATATAATCGTGTCAAAGGACGGGAGTGGAACCGTTAAGACCATCGCGGAGGCGATAAAGAAAGTGCCGGAGCACAGTAGCCGCCGGATTATTGTGTACGTGAAGGCAGGAAGGTACGAAGAGGAAAATTTGAAGGTTGGGAGGAAGAAAACGAATGTGATGTTCGTAGGTGATGGGAAGGGCAAGACGGTCATAACAGGTGGCAAGAATTTTGCCCAAGGAACCACCACCTTCCACACTGCCTCCTTCGCTGCTTCTGGGGCTGGTTTTATTGCCAAGGATATGACATTCGAGAACTATGCCGGGCCCGGGAAGCACCAAGCCGTGGCCCTCCGTGTCGGAGCCGACCATGCGGTGGTGTACCGATGCAGCATCATCGGATACCAAGACACATGTTATGTCCATTCCAACCGTCAGTTCTTCAGGGAATGTGACATTTATGGCACTGTTGATTTCATCTTCGGCAACGCGGCCGTTGTTTTCCAAAACTGCAACCTCGTATCTCGAAAGCCCATGGCCCAACAGATGAACACCATCACGGCCCAAAACAGAAAAGACCCGAATCAGAACACGGGTATTTCCATTCACAATTGTCGGATCCAAGCCGCTTCTGATCTGGAGGCCTCCAAGGGAAGCGTCCCAACCTATCTGGGCCGTCCATGGAAGATGTACTCTAGAACCGTTTACATGCTTTCCTTCATGGGGGATCACATACATCCACGTGGATGGTTGGAGTGGAATGCCACGTCACCAGTAGACAAATTATATTATGGAGAGTATATGAATAGTGGGCCGGGTGCAGCTGTTGGAGGCCGGGTCAAATGGCCCGGCTATCGGGTCATAACATCGACAGTGGAGGCGAATAGGTTCACGGTAGCTCAATTCATAGCAGGGTCGTCATGGTTGCCGTCAACGGGGGTGGCATTCGTCGGAGGACTATCTAATTGA 1428 0.5245 MTLQHLSKAFYSSTTISNVQMDQRQRSAYEDCLELLEDSVDALMRSLTSVVPGGGGGSTDDVLTWLSASLTNQDTCSEGFADTSGTVKDQMASNLKDLSELINNCLAIYAGNDFSGIPIQNRRRLMGDNDNGDISSGEFPTWLSKRDRSLLSTPAPAMQADIIVSKDGSGTVKTIAEAIKKVPEHSSRRIIVYVKAGRYEEENLKVGRKKTNVMFVGDGKGKTVITGGKNFAQGTTTFHTASFAASGAGFIAKDMTFENYAGPGKHQAVALRVGADHAVVYRCSIIGYQDTCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCNLVSRKPMAQQMNTITAQNRKDPNQNTGISIHNCRIQAASDLEASKGSVPTYLGRPWKMYSRTVYMLSFMGDHIHPRGWLEWNATSPVDKLYYGEYMNSGPGAAVGGRVKWPGYRVITSTVEANRFTVAQFIAGSSWLPSTGVAFVGGLSN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1130 475 SUPERFAMILY Pectin lyase-like 156 472 IPR011050 -
Lele27g1130 475 ProSitePatterns Pectinesterase signature 2. 306 315 IPR033131 -
Lele27g1130 475 Gene3D - 155 473 IPR012334 -
Lele27g1130 475 FunFam Pectinesterase 155 473 - -
Lele27g1130 475 PANTHER PECTINESTERASE 3 463 - -
Lele27g1130 475 Pfam Plant invertase/pectin methylesterase inhibitor 12 108 IPR006501 GO:0004857
Lele27g1130 475 SMART PMEI_2 1 108 IPR006501 GO:0004857
Lele27g1130 475 Pfam Pectinesterase 161 458 IPR000070 GO:0030599|GO:0042545
Lele27g1130 475 CDD PMEI-like_3 2 108 - -
Lele27g1130 475 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 111 IPR035513 -
Lele27g1130 475 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 109 IPR006501 GO:0004857
Lele27g1130 475 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 109 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1130 Lele-ChrLele27 18578547 18581286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1130 2 475 Carbohydrate Esterase AT5G53370 70.564 0.0 718