Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1125 ATGCAGTCCAAAAACGCTCGTTATCACATGATGGACATCATGAAGGAATTTCATCCCCTGAAAATGTGCTGTCTGGAACACTCACAAAAGACAGTTATGAAAAAGAAAAAACTTCTGGACAATTCAACAAATTTTACAGAACAATCTGAGGAGTCTCCTAATGGAATCATTCCCAACTTTGAGCATGATTGTGACAGTTCCTGTGCTGGCGTTGAACCATGGACATTTGAGCAACACCTTGGGGACGCTGTTTTCACACCTGCAGGGTGCCCGCATCAAGTTAGGAATAGACAGTCTTGCATAAAAGTGGCTCTCGACTTCGTTTCACCTGAAAATGTTCAAGAGTGCGTTCGATTGGCGGAGGAGTTTCTGCTGCTTCCAAAGAACCATAGATCTAAGGAAGATAAACTGGAGGTACCGAAGATGGCACTATACGCTGCAAAAGCTGCAATAACTGAAGCCATGAAATTAATGCAGAGGATACGAAAATCACAATATGAAGTAGATCATCTTGGGGTAGCATTGGTTTGGCCAATCAGTTCAATTATCCTCACTAGGAGAGTCGGCTTCCTTATGAATGTTAGATTGTCATTCAGCTTTGCTGAAACTCTTCGACCGGTTAACATGGCTGCCGCGCTTCGATCCAAGCCTTACAAGGAGACGGCTTCTCTCACTCTTTCTCAATTCAGATATTTTGTATACAATTATATGCATGCGGGTCGCATGCCCAGTTCTCATTGTACGCGCCGCACAAAGTCGGATGAGCACTTCATGAATACTCCCTATCACTTCACTTCCTTCAAGCCCGTCTCACTACGCGGCGACTTAATCGAAAAGGGCACCCAGATGATCGAAGGTAGGAGAAAAACTCAGAATTGTAATAAAAATTTGGGGGACAAAATGGGCAGGGAGTCCAACGTATTTATTTGTTCCTATGGGGACCCGCCCGAGGTGTGGTCGGGTGGCGGGATTGTTGTTCGGTCAGGAAATACGACTTTTAATGTTGTCCGCGGCGGCGGTTCTAGTCCTGGTTCAGGAGGTGATTCTGGGTCGAATTCAAAGGATGGGGGCTGGGGTGGATCCAATTTGGGGCATAATTTTCCAACGCCAAAGGAGATTTGCAAGGGACTCGACAAATTTGTAATTGGACAGGAGAAAGCCAAGAAGGTTCTTTCTGTGGCAGTTTACAACCACTATAAGAGAATATTTCATGAATCTTCGCACAAGTGGCCTGCAGGAGATTCACGTGATGACAAAGACGATATTGTTGATGAAGATAGAATTGAAATTGAGAAGAGCAATATTCTTTTGATGGGGCCAACAGGATCAGGGAAGACATTACTTGCCAAAACCCTGGCACGGTTTGTAAATGTTCCCTTTGTTATTGCAGATGCAACCACACTCACTCAGGCAGGATATGTTGGGGAAGATGTGGAGTCGGTATTATACAAGCTACTTGTGGTTGCAGACTACAACGTGGCAGCCGCACAACAAGGCATTGTTTACATTGATGAAGTTGATAAAATTACCAAAAAGGTTCCCCTTCCTAATGCCGAAAGCCTTAACATCAGTAGAGATGTCTCAGGGGAAGGTGTTCAGCAAGCACTATTGAAGATGCTTGAGGGAACAGTTGTCAATGTTCCTGAGAAGGGAGCTCGAAAACATCCTAGAGGCGACAATATACTGATTGATACAAAGGATATACTTTTTATTGTTGGAGGAGCCTTTGTTGACTTAGAGAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTATTGGATTTGGGGCACCCGTACGCGCAAACATGAGGACAGGCGGTGTCACAGATGCTGCTGTTGCATCATCATTATTGGAAACTGTTGAAAGTAGCGATCTTATCGCATATGGTTTAATACCTGAATTTGTTGGGCGGTTTCCTATCCTGGTCAGTTTGTCGGCTTTAACTGAAAATCAACTCATTCAGGTTCTCTCGGAGCCAAAGAATGCTCTAGGGAAGCAATACAAGAAAATGTTCGAAATGAATGGAGTGAAGCTGCATTTCACAGAAAATGCCCTAAGATCAATTGCCCGAAAAGCAATATCTAAGAATACTGGTGCTCGGGGTTTACGGTCTATATTAGAGAACGTGTTGGTAGATGCCATGTATGAGATTCCTGATATCAGAACGGGTGATGACATTATCGATGCCGTTGTCGTCAATGAAGAAGCTATTGAACATCAGGGGCATGGCCGGGGTGGAGCCAAAATCCTCTATGGCCAGGGTTCACTGGATCGTTTTCTTGAAGAACACACAAGTAATTCTGAGTCTACGGAAGGTTCAGACAGAGACCATGAAGCAGACCCAGAACTTCATTCTGTTGTTGCCAACATGTAA 2373 0.4429 MQSKNARYHMMDIMKEFHPLKMCCLEHSQKTVMKKKKLLDNSTNFTEQSEESPNGIIPNFEHDCDSSCAGVEPWTFEQHLGDAVFTPAGCPHQVRNRQSCIKVALDFVSPENVQECVRLAEEFLLLPKNHRSKEDKLEVPKMALYAAKAAITEAMKLMQRIRKSQYEVDHLGVALVWPISSIILTRRVGFLMNVRLSFSFAETLRPVNMAAALRSKPYKETASLTLSQFRYFVYNYMHAGRMPSSHCTRRTKSDEHFMNTPYHFTSFKPVSLRGDLIEKGTQMIEGRRKTQNCNKNLGDKMGRESNVFICSYGDPPEVWSGGGIVVRSGNTTFNVVRGGGSSPGSGGDSGSNSKDGGWGGSNLGHNFPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIFHESSHKWPAGDSRDDKDDIVDEDRIEIEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESVLYKLLVVADYNVAAAQQGIVYIDEVDKITKKVPLPNAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNILIDTKDILFIVGGAFVDLEKTISERRQDSSIGFGAPVRANMRTGGVTDAAVASSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQVLSEPKNALGKQYKKMFEMNGVKLHFTENALRSIARKAISKNTGARGLRSILENVLVDAMYEIPDIRTGDDIIDAVVVNEEAIEHQGHGRGGAKILYGQGSLDRFLEEHTSNSESTEGSDRDHEADPELHSVVANM 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1125 790 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 365 740 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Lele27g1125 790 MobiDBLite consensus disorder prediction 761 790 - -
Lele27g1125 790 Pfam JmjC domain, hydroxylase 66 107 IPR003347 -
Lele27g1125 790 MobiDBLite consensus disorder prediction 335 362 - -
Lele27g1125 790 SUPERFAMILY Clavaminate synthase-like 67 148 - -
Lele27g1125 790 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 361 645 - -
Lele27g1125 790 Gene3D - 646 745 - -
Lele27g1125 790 SMART ClpB_D2_small_2 647 737 IPR019489 -
Lele27g1125 790 MobiDBLite consensus disorder prediction 761 783 - -
Lele27g1125 790 Pfam AAA domain (Cdc48 subfamily) 431 640 IPR003959 GO:0005524|GO:0016887
Lele27g1125 790 MobiDBLite consensus disorder prediction 335 359 - -
Lele27g1125 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 729 IPR027417 -
Lele27g1125 790 Gene3D - 361 645 IPR027417 -
Lele27g1125 790 Gene3D Cupin 9 133 - -
Lele27g1125 790 ProSiteProfiles JmjC domain profile. 1 124 IPR003347 -
Lele27g1125 790 SMART cupin_9 6 124 IPR003347 -
Lele27g1125 790 CDD AAA 432 513 - -
Lele27g1125 790 Pfam C-terminal, D2-small domain, of ClpB protein 647 716 IPR019489 -
Lele27g1125 790 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 255 766 - -
Lele27g1125 790 SMART AAA_5 431 594 IPR003593 -
Lele27g1125 790 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 646 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1125 Lele-ChrLele27 18536429 18545054 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele27g1125 AAA_2 3.1e-41 CL0023