Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1106 ATGGATTGCTTAATCAGCGGAGACGAAGAATGTCGATTTTACGATGCTCAAGAAGATGTTCTGTCCATTGCTGATGATAAATCCGATGGCGGCACTGACACACCGAACGCGATATCGAATTGTTCTGAATACGAAGTGTGGGTTCGGAGCCCAGGGAGTGTTCAGGAGCGTCGCAGTAAGTTTAAGAAGTGGATGGGGCTTAGTTCAGATCGAAGTGCCCTTGAAAATTCAGTTGATAGGGGCAGAATTGAAGATAATAGCGCGGCTGTGACGAGAATCTCTGGTTTTGAAGGTGATTTTTGTTCAAGTCGCTCTTCAATGTCTTGTTGGTCCACTGAAGGTTTATCAGAAGCGTGTGGCTCAGTATGGGACCAGAAAATGGGTGACGATAGAGACATGGGTTCGGATCAATTGGTTGTTTCAGAGGAGCCTGGGAATTCTACAAAAGTCTCTGGGGAACTCCCCTCGTTTCAACATTTGATGGGGAAGAAGTCTGAGGATACTAATGTTTTTAGTTGTAAGGTGAAAAGGGCTAGAGGGGGTTGGTTCAGGAGATTACGTTCAATAACATGCATGATTGAGGGGCAAGTCGAAGGGGATAAGCGAAGACAAGAAGGAAGCTCTGGATTCTCAGGGTTTAGGATTCAGAGAGTCAAGGTCCGCCAATTCAGGAAGCAAATGAAGGAACTTTCAGCACTTCTCATGGGGCAAGATTTTCAAGCTCATGAAGGTTCAATTTCAGCCATGAAATTTAGTCCTGACGGGCAGTATCTTGCCAGTGCTGGTGAAGATGGGATTGTAAGATTGTGGAAAGTGGTGGAAGCTGAAAGATGTAATGAAATTGACACTCCAGAACTTCATCCATCTTGCATATACTTTACAGTGAATACTCTCTCTGAATTGAAACCCCTATATATGGATAAGGAAAAAATAAGCAAAGGGAGAAGCCTGAGAAAAACATCAGATTCTGCTTGCATTATTTTGCCTCCGAAGGTCTTTCGGCTGTTGGAGAGACCATTGCATGAGTTCCATGGGCATGGAGGTGAAGTTTTGGATCTCTGTTGGTCAAATAATAATCATCTGCTGTCATCTTCAGTTGACAAAACAGTTCGTCTATGGAGAGTGGGTTATAATCACTGCCTGAAAATTTTTCAACACAATAACTATGTGACATGCATTCAATTCAATCCTGGGGATGATAATCATTTCATTAGTGGATCTATAGATGGAAAAGTGCGTATTTGGGCAATTTCTGATTGTCATGTTGTTGATTGGACCGATGTTAGAGAAATCGTGACTGCTGTGTGTTATCGACCTGATGGGCAGGGAGGGATTATTGGCTCCATGACAGGCAATTGTCGATTTTACAGTGTATCAGAGGATCACTTACAGTTAGATTCCCAACTATGCTTACTTAATAAGAAGAAACTTCCTGGCAGAGGGATAACTGGCTTTCAGTTTATTCCACACGATTCTAGTAAAGTCATGGTTACCTGTGCTGATTCACAAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAATACAAAGGTCTCAGTGCAGGGAATCATATGTCTGCATCCTTTACTTCAGATGGGAAACATATTTTATCAGCATCTGAGGATTCTAATGTATATCTCTGGAACGTTAGTCAGGAACAGTCTAGTCCCAGAAAAACCAAGAAGATAAGGTCTTGTGAGCGGTTCTTTTCAGATGCTTCCATTGCAGTACCTTGGTGTGGTTTGAAATCTCAAAATCCTGCAAATGAACTTCAGCTGGATGTTTTAGATCAGAGATCATCTCTAACTGTATGTCCCAATCCACCTGCTTCTTTTTCTTTAGGTCAAGAGTTTTTCTCCGAGTCTCCTAGGGGATCTGCAACTTGGCCTGAGGAAAAGCTTCATTCTTCAAGCCCCAAGCCTGGAAAATCTGCAATGCATAAATCTGATTACAAGTTCTTTAAAGCTTCTTGCCAGAGTACCTCCACTGCTCATTCGTGGGGTCTGGTCATCGTGACTGCAGGTTTGGATGGGCGGATAAAATCGTTCGTCAATTACGGGTTACCTGTTATCATTTGA 2079 0.4281 MDCLISGDEECRFYDAQEDVLSIADDKSDGGTDTPNAISNCSEYEVWVRSPGSVQERRSKFKKWMGLSSDRSALENSVDRGRIEDNSAAVTRISGFEGDFCSSRSSMSCWSTEGLSEACGSVWDQKMGDDRDMGSDQLVVSEEPGNSTKVSGELPSFQHLMGKKSEDTNVFSCKVKRARGGWFRRLRSITCMIEGQVEGDKRRQEGSSGFSGFRIQRVKVRQFRKQMKELSALLMGQDFQAHEGSISAMKFSPDGQYLASAGEDGIVRLWKVVEAERCNEIDTPELHPSCIYFTVNTLSELKPLYMDKEKISKGRSLRKTSDSACIILPPKVFRLLERPLHEFHGHGGEVLDLCWSNNNHLLSSSVDKTVRLWRVGYNHCLKIFQHNNYVTCIQFNPGDDNHFISGSIDGKVRIWAISDCHVVDWTDVREIVTAVCYRPDGQGGIIGSMTGNCRFYSVSEDHLQLDSQLCLLNKKKLPGRGITGFQFIPHDSSKVMVTCADSQVRILDGLNVIGKYKGLSAGNHMSASFTSDGKHILSASEDSNVYLWNVSQEQSSPRKTKKIRSCERFFSDASIAVPWCGLKSQNPANELQLDVLDQRSSLTVCPNPPASFSLGQEFFSESPRGSATWPEEKLHSSSPKPGKSAMHKSDYKFFKASCQSTSTAHSWGLVIVTAGLDGRIKSFVNYGLPVII 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1106 692 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 375 IPR001680 GO:0005515
Lele27g1106 692 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Lele27g1106 692 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Lele27g1106 692 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Lele27g1106 692 Gene3D - 478 683 IPR015943 GO:0005515
Lele27g1106 692 SMART WD40_4 377 416 IPR001680 GO:0005515
Lele27g1106 692 SMART WD40_4 336 374 IPR001680 GO:0005515
Lele27g1106 692 SMART WD40_4 232 271 IPR001680 GO:0005515
Lele27g1106 692 SMART WD40_4 418 457 IPR001680 GO:0005515
Lele27g1106 692 SMART WD40_4 509 549 IPR001680 GO:0005515
Lele27g1106 692 SMART WD40_4 468 508 IPR001680 GO:0005515
Lele27g1106 692 Pfam WD domain, G-beta repeat 379 415 IPR001680 GO:0005515
Lele27g1106 692 Pfam WD domain, G-beta repeat 239 271 IPR001680 GO:0005515
Lele27g1106 692 Pfam WD domain, G-beta repeat 338 373 IPR001680 GO:0005515
Lele27g1106 692 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 343 375 - -
Lele27g1106 692 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 383 415 - -
Lele27g1106 692 SUPERFAMILY WD40 repeat-like 238 681 IPR036322 GO:0005515
Lele27g1106 692 MobiDBLite consensus disorder prediction 623 645 - -
Lele27g1106 692 ProSitePatterns Trp-Asp (WD) repeats signature. 536 550 IPR019775 -
Lele27g1106 692 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Lele27g1106 692 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 415 IPR001680 GO:0005515
Lele27g1106 692 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 272 - -
Lele27g1106 692 PANTHER WD REPEAT DOMAIN 44 8 689 IPR040324 -
Lele27g1106 692 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 558 IPR001680 GO:0005515
Lele27g1106 692 Gene3D - 228 476 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1106 Lele-ChrLele27 18419542 18422921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1106 335 564 U-box Gene Family AT2G33340 24.701 4.99e-06 47.8