LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g1083	ATGGAGGTTGATGAAGAGTATATTCAAGCATCAGAAGAAAGCTTCATCAGCTGCTCAGAGCCGCCACCTCAGAATTCAAGGAAGAAGAACAAAGTAGTGAACAAGAGGAGGTTTAGTGATGAACAAATCAGATCATTGGAGTGCATATTTGAGTCAGAGTCCAAGTTAGAGCCAAGGAAGAAGATCCAAGTAGCAAGAGATCTTGGTCTACAACCTCGCCAAGTCGCTATATGGTTCCAGAACAGAAGAGCCAGGGGGAAATCCAAATGGATAGAGCAAGAATACAGGAAGCTCAGAGATGATTATGAGAATTTAGTTTCCAGGTTTGAGTCCCTCAAGAAAGAGAAGGAGTCCTTGCAAGTAGAGTTGCAGAATCTGCATGATCTAATGGAGACATCTCACAATGGTGAAGAGAAAACGAGCACAGATAAGCCAAGTTCCTCTTATGAGGGTTTACATGTCAGAGAAGAAGGCATGCATTTACGAGATCAAAGTGAAATGAGCAAGAAGAATAATAATGGGTATTCTGAAGATAATACAGAACACCAACTTCTGAGAATGGAGGAGCTTGAAAAATGGTACGGTGGAGATCCAAGTGGCCTCTTAGATCAACCTTGTAGTTCACATTGGTTGGATTTCTGGACTTGA	648	0.4198	MEVDEEYIQASEESFISCSEPPPQNSRKKNKVVNKRRFSDEQIRSLECIFESESKLEPRKKIQVARDLGLQPRQVAIWFQNRRARGKSKWIEQEYRKLRDDYENLVSRFESLKKEKESLQVELQNLHDLMETSHNGEEKTSTDKPSSSYEGLHVREEGMHLRDQSEMSKKNNNGYSEDNTEHQLLRMEELEKWYGGDPSGLLDQPCSSHWLDFWT	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g1083	215	FunFam	Homeobox-leucine zipper protein ATHB-7	12	89	-	-
	Lele27g1083	215	MobiDBLite	consensus disorder prediction	12	33	-	-
	Lele27g1083	215	Pfam	Homeobox associated leucine zipper	90	130	IPR003106	GO:0006355\|GO:0043565
	Lele27g1083	215	MobiDBLite	consensus disorder prediction	159	179	-	-
	Lele27g1083	215	SMART	HOX_1	27	93	IPR001356	GO:0003677
	Lele27g1083	215	MobiDBLite	consensus disorder prediction	12	28	-	-
	Lele27g1083	215	Pfam	Homeodomain	35	87	IPR001356	GO:0003677
	Lele27g1083	215	MobiDBLite	consensus disorder prediction	131	150	-	-
	Lele27g1083	215	PRINTS	Lambda-repressor HTH signature	69	85	IPR000047	GO:0003677
	Lele27g1083	215	PRINTS	Lambda-repressor HTH signature	60	69	IPR000047	GO:0003677
	Lele27g1083	215	SUPERFAMILY	Homeodomain-like	17	88	IPR009057	-
	Lele27g1083	215	Coils	Coil	95	129	-	-
	Lele27g1083	215	ProSitePatterns	'Homeobox' domain signature.	64	87	IPR017970	GO:0000981\|GO:0006355
	Lele27g1083	215	CDD	homeodomain	35	90	IPR001356	GO:0003677
	Lele27g1083	215	ProSiteProfiles	'Homeobox' domain profile.	29	89	IPR001356	GO:0003677
	Lele27g1083	215	Gene3D	-	16	93	-	-
	Lele27g1083	215	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	27	178	IPR045224	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g1083	Lele-ChrLele27	18254033	18254791	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g1083	11	215	Homeobox Transcription Factor Family	AT2G46680	38.956	5.47e-39	133

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele27g1083		Homeodomain	7.8e-16	CL0123