Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1080 ATGGGGCATTGTTGCAGCAAAAACGTTTCGGTCGTCAACAATGAAACTGTTACAGCCGATCACCGCCCTAGATCGCCACAGCCGGCGCCATCGCCCCTGCCGTCCGGCAACTCAGTGTCAGGAGCTGGTGATGCAACCCCTGGTAGGAATACTCCCTCTCATTCCTTCTCCACTAGTCCCTTCCCGAGCCATCTCCCTCCTGGGGTGGCACCATCCCCGGTTAGAACTCCGGGCAGGAAATTCAGATGGCCTCTTCCGCCTCCATCGCCGGCCAAGCCGATCATGGCGGCGTTACTGAGACGGCAGGGGAAGGCGAAACCGAAGGATGGGCCGATACCCGAGGAGCAAACCGAGGGTGGGGAGGGAGAGAGGCCGTTGGACAAGAGCTTTGGATATGCAAAGAATATTGGGGCAAAGTACGAGCTGGGAAAAGAAGTAGGTCGAGGACATTTTGGTCATACTTGCTGGGCGAAGGCAAAGAAGGGAGACCTCAAGGGGCAATCCGTAGCTGTAAAAATCATATCGAAAGCTAAGATGACAACAGCAATAGCAATTGAAGATGTAAGGAGGGAGGTGAAGATGTTGAAGGCCTTATCTGGACATAATAATTTGGTGAAATTTCATGATGTATTTGAGGATGCCAATAACGTCTACATAGTGATGGAATTGTGTGAGGGAGGAGAACTACTTGACAGAATTCTTTCAAGAGGTGGAAGATACACAGAGGATGATGCTAAAGCAATTCTTGTACAAATTCTAGATGTAGTTGCCTTTTGTCATCTCCAAGGAGTTGTTCACCGTGATCTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGAAGATGATTCTCTGATGAAGGTTATTGATTTTGGTCTATCGGATTTTGTTAGGCCAGATCAACGCCTCAATGATATCGTTGGCAGTGCCTACTATGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGCAGACTTGTGGAGCATCGGAGTTATTACATACATATTGTTGTGTGGAAGCAGACCATTCTGGGCACGCACTGAATCAGGAATCTTCCGGTCTGTCCTAAGAGCTAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTAAAGAGGCTTTTGAACAAGGACCATAGAAAAAGGATGACTGCTGCCCAAGCTCTAGCTCATCCATGGTTGAGAAATGAAAACCGTGCTATTCCATTAGACATTTCAATCTTCAAGTCAGTCAAGTCATATGTGCAGGCCACACCTTTCAAACGAGCAGCCCTGAAGGCTCTATTAAAAGCATTGACAGAAAATGAACTCCTCTTTCTAAAAGCACAATTTAGCCTGTTAGAACCAAACAATGGTGTTGTTTCCCTTGACAATTTTAGAGCGGCTCTTATGAAACATGCTACTGATACCATGAAGGAATCAAGAGTCCCTGACATTTTAAATTTGATGGAGCCGCTGGCTTACAAAAAAATGGATTTTGAAGAGTTTTGCGCTGCCGCACTCAGTGTATACCAGCTCGAGGTTCATGAAGACTGGGAGAGAATTGCAACCACGGCTTTCGAGCATTTCGAACGGGAAGGAAACAGAGTCATTTCAGCTGAGGAGTTAGCTCAGGAGATGAATTTGGGTCCTTCAGCTTACCCAGTACTAAGTGATTGGATCAGGAAATCTGATGGAAAACTAAGTCTCAATGGATATACCAAGTACATGCATGGTGTCACAATACGTAGTTCAAATCCAAGACCCCGACAACCCGTATGA 1785 0.4588 MGHCCSKNVSVVNNETVTADHRPRSPQPAPSPLPSGNSVSGAGDATPGRNTPSHSFSTSPFPSHLPPGVAPSPVRTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKDGPIPEEQTEGGEGERPLDKSFGYAKNIGAKYELGKEVGRGHFGHTCWAKAKKGDLKGQSVAVKIISKAKMTTAIAIEDVRREVKMLKALSGHNNLVKFHDVFEDANNVYIVMELCEGGELLDRILSRGGRYTEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKEDDSLMKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEADLWSIGVITYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNENRAIPLDISIFKSVKSYVQATPFKRAALKALLKALTENELLFLKAQFSLLEPNNGVVSLDNFRAALMKHATDTMKESRVPDILNLMEPLAYKKMDFEEFCAAALSVYQLEVHEDWERIATTAFEHFEREGNRVISAEELAQEMNLGPSAYPVLSDWIRKSDGKLSLNGYTKYMHGVTIRSSNPRPRQPV 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1080 594 FunFam CDPK-related kinase 3 132 304 - -
Lele27g1080 594 MobiDBLite consensus disorder prediction 1 128 - -
Lele27g1080 594 ProSiteProfiles Protein kinase domain profile. 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1080 594 SUPERFAMILY EF-hand 434 580 IPR011992 -
Lele27g1080 594 Gene3D - 421 509 - -
Lele27g1080 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Lele27g1080 594 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 566 - -
Lele27g1080 594 CDD STKc_CAMK 139 401 - -
Lele27g1080 594 MobiDBLite consensus disorder prediction 102 128 - -
Lele27g1080 594 Pfam Protein kinase domain 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1080 594 Gene3D Transferase(Phosphotransferase) domain 1 229 420 - -
Lele27g1080 594 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Lele27g1080 594 FunFam Calcium-dependent protein kinase SK5 312 407 - -
Lele27g1080 594 FunFam CDPK-related kinase 1 133 228 - -
Lele27g1080 594 SMART serkin_6 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1080 594 Gene3D - 426 573 - -
Lele27g1080 594 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Lele27g1080 594 SUPERFAMILY Protein kinase-like (PK-like) 139 424 IPR011009 -
Lele27g1080 594 MobiDBLite consensus disorder prediction 34 62 - -
Lele27g1080 594 FunFam CDPK-related kinase 1 438 509 - -
Lele27g1080 594 MobiDBLite consensus disorder prediction 7 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1080 Lele-ChrLele27 18226990 18233419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1080 51 585 EF-hand Containing Proteins AT3G50530 61.713 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele27g1080 Pkinase 1.6e-70 CL0016