Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1077 ATGGTGCCTCATCACCACCACCGTCCATTATCGCCATTTGATAACGATTCCTGTTATGGCGATGGCCCCACAACTTGTTCTTCTGTGTCTATGTATAATATAAACCATGTTGTTAGTGGAGCTTTTGCTTCTCCTGCTGCTGTAAGAACTTTGCAGCCTTTTGACATTTCCACTCACCCTGCCTTCAAATCCCCAGGGGCGATGGCGGCTTCATTAGGATTCCCTTTCACAGATGCTCAATGGAAGGAGCTTGAAAGGCAAGCTATGATTTACAAGTACATGATGGCTTCTGTTCCTGTTCCTCCTAATCTCCTAATCCCCACCGCTTTCACACCTGCTTCTTGCTCTCCCTTTGACGGTGGGTTCAATCTGAGGTTGTCTAGTGGCAGCGCTGATCCAGAGCCAGGGAGGTGCAGGAGAACAGATGGGAAAAAATGGAGATGTTCTAGAGATGTGGCTCCTAACCACAAGTACTGTGAGCGTCATATGCACAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCAAACCGACGGCGGCACCACCACCACCGACAACAACCAGCAGCAAAACAAAAGGGCTCGCCAAGATTTTCATCACCCTCACCCTACTCCTGCTGTTACTGTGGCTGTTTCTAATCCCACGGTTACAAATGGTGGATCTTCTTCTCAGTATCTTCAGTATACTACTACTAGTCAGACATTTCATGAATCTTCCCTTTCTCTTGACAAGTATGGTGTCAAAGCTGCTAATTTTGGATCTTTGGCTTCTGTGCCTTCTGATACCCAACATGGGGGCTTGGACTGGATGCTGAAGGGAGATCCCATTTCCATGGCTGCTTCTGATCCAGAATGGCAGCAACCTCTGATGCAAGCTAAAGCTGATCTGATTAAACAGAGTTCAAGTTACGAAGATGCTCTGTATCTCAGTTCCTATGCGTCTTTCAACTCAGGACTGGACCAACGAAACAGGCGTTGCTCTCTGTTCCTTAATCCTCTCCTTCCTATGGAGAATCCCGAGTCCCAAAAACCCAGGGAATTCATTGACGCTTGGTCTAATGCTGAAACAGTGGAAAATAATAATAATGGCAACGCCTGCAAAAGCCTTGTTTCCTCAAATGCAAAACTTTCCCTTTCTTCTCTTGATCTATCCATGGGTGGTGGCTCCGGGGTGGATGAAGAAATAGGTTCTATTCATATGGGTTTAGGCCTAATGGAGCCTGATGGAACCGCAGAAAATGGTAACAAAACCCATCTTTCTAATTGGCTCACTCCTTCTGCACCGTGGTCGGGTTCAAACCCTGGTGGTCCCCTAGCTGAGGTTCTAAGGCCAAGCGCGGCGGCCTCCAATCCACCGTCTCCGATCATAACTAATGCAGAATCTGGCAGTCCTCTGGCAACAATGGTGTCATCTCCATCTGGGGTTTTGCAGAAAACACTGGGATCCATGTCTGATTGCAGTACCAATAGTAGCCCAACAGTGGCATCTTCAGGGGCCAATTCTGTGTTTGCCTTGCTCTTGTTCAATAAAGCAAATTAG 1542 0.4754 MVPHHHHRPLSPFDNDSCYGDGPTTCSSVSMYNINHVVSGAFASPAAVRTLQPFDISTHPAFKSPGAMAASLGFPFTDAQWKELERQAMIYKYMMASVPVPPNLLIPTAFTPASCSPFDGGFNLRLSSGSADPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVQTDGGTTTTDNNQQQNKRARQDFHHPHPTPAVTVAVSNPTVTNGGSSSQYLQYTTTSQTFHESSLSLDKYGVKAANFGSLASVPSDTQHGGLDWMLKGDPISMAASDPEWQQPLMQAKADLIKQSSSYEDALYLSSYASFNSGLDQRNRRCSLFLNPLLPMENPESQKPREFIDAWSNAETVENNNNGNACKSLVSSNAKLSLSSLDLSMGGGSGVDEEIGSIHMGLGLMEPDGTAENGNKTHLSNWLTPSAPWSGSNPGGPLAEVLRPSAAASNPPSPIITNAESGSPLATMVSSPSGVLQKTLGSMSDCSTNSSPTVASSGANSVFALLLFNKAN 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1077 513 MobiDBLite consensus disorder prediction 161 207 - -
Lele27g1077 513 Pfam WRC 133 175 IPR014977 -
Lele27g1077 513 MobiDBLite consensus disorder prediction 176 192 - -
Lele27g1077 513 ProSiteProfiles WRC domain profile. 132 176 IPR014977 -
Lele27g1077 513 ProSiteProfiles QLQ domain profile. 75 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele27g1077 513 Pfam QLQ 75 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele27g1077 513 SMART QLQ_2 74 110 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele27g1077 513 PANTHER GROWTH-REGULATING FACTOR 5 58 380 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1077 Lele-ChrLele27 18188570 18190738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1077 348 489 GRF Transcription Factor Family AT5G53660 37.255 1.09e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele27g1077 WRC 5.4e-21 No_clan