Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1072 ATGTCACAGCAGAGGCAAAATAGGATGATGATGAATAATCAAAGCAATGCAAAACAAGTTGGTGACACGACCTATACGAAGATCTTCGTTGGGGGGGTGACTTGGGAAACTAAAAGAGACTCTCTGAAACGCTATTTTGAGCAGTTCGGAGAGATCACAGAAGCTGTTGTTATCACTGACAGAAACACCGGAGCTTCCAAAGGCTATGGCTTCGTTACTTTTAAGAATCCTGAATCTGCAATGAGAGCTTGCCAGAATCCATATCCTTTGATTGATGCCAGGAGGGCTAATTGTAATCTTGCAGCTCTTGGTGCTCGCAAATTCAACCCATCATCTACCACTGGAGCTGAGAAATTTGACAATACCAATTCATGGGCCATGGTACCAACCCCATTTCAAGGCTCTTCTTCATATTACAATCATCATACACCCCATTACACTTTTCCCTTTCCATCACCCTATAGATATCCTGGTTATCCTCCCTCACAAGAAATCTATGCAATGAACTACTATAATGTTTATGGAGGGCAACAGGTTCCATTTCGATGGCGTCCTGCAATATACCAACCATTTTTTGGGGTGAGTAGCAATTCAATGAGATTGCCAGCAGAAGCAATGGGGAAGAAGACGACCCAGTATTCTGATATACCACCAACCCAGGAAATGTTGTCAGTTGTTGGAGTACCACCAGAACCTATTTCAGTTTCTTCTTCAATACCCACCTCTGGTTCAGTATCAAGAAAAGTGACAGCAACAGCTTCTGGTTCTGCAGAAGCAGCAGCAGCAGCCGCCAAGATGGGAGCGTCATCCCCTGTACACAAATCTTCATCAGCTTAG 837 0.4397 MSQQRQNRMMMNNQSNAKQVGDTTYTKIFVGGVTWETKRDSLKRYFEQFGEITEAVVITDRNTGASKGYGFVTFKNPESAMRACQNPYPLIDARRANCNLAALGARKFNPSSTTGAEKFDNTNSWAMVPTPFQGSSSYYNHHTPHYTFPFPSPYRYPGYPPSQEIYAMNYYNVYGGQQVPFRWRPAIYQPFFGVSSNSMRLPAEAMGKKTTQYSDIPPTQEMLSVVGVPPEPISVSSSIPTSGSVSRKVTATASGSAEAAAAAAKMGASSPVHKSSSA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1072 278 SMART rrm1_1 27 99 IPR000504 GO:0003723
Lele27g1072 278 Gene3D - 1 116 IPR012677 -
Lele27g1072 278 CDD RRM_RBM24_RBM38_like 26 101 - -
Lele27g1072 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Lele27g1072 278 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Lele27g1072 278 PANTHER BOULE-RELATED 14 227 IPR037366 -
Lele27g1072 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1072 Lele-ChrLele27 18161551 18162859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1072 22 102 C2H2 Transcription Factor Family AT2G19380 43.210 4.47e-15 73.2