Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1069 ATGAGCGGTCGCTTTTCTCGCACTATTTACGTTGGCAACCTGCCTTCAGATATAAGAGAGTCTGAAATCGAGGATCTATTCTACAAGTATGGCCGTATATTGGATGTTGAGTTAAAGATTCCACCTCGACCACCATGTTACTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATTCGTGGTCGTGATGGCTATAATTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCGCATGGTGGTAGGGGGCCATCATCAAGTGATCGGCGTGGTTATGGTGGCGGTGGGAGCCGTTTTGGCATCTCACGTCATTCTGAATATAGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTAAAGGATCATATGCGGAAAGCTGGTGATGTATGTTTTGCCGAGGTTTCTCGTGATAGTGAAGGTACATTTGGCATTGTTGATTACACTAATTATGACGACATGAAATATGCTGTTCGGAAACTTGATGATACTGAATTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCAGGAGCCCTGGCAGAAGCAGGAGCAGAAGCAGAAGTCCTAAAAGGAATAGAAGTAGGTCATTGGAGAGATCTGTATCCAGGTCACCATCTAGGTCTAGATCACCATCACCAATCAAATCTCGGCCAAGGTCGCCATCACGGTCACGATCTCGGTCTCGGTCACAATCTGGATCACCACCACGCCAGGCTCGATCAGCCAGTGGTTGA 789 0.4664 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDVELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAVRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSPGRSRSRSRSPKRNRSRSLERSVSRSPSRSRSPSPIKSRPRSPSRSRSRSRSQSGSPPRQARSASG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1069 262 CDD RRM2_SF2_plant_like 109 184 - -
Lele27g1069 262 SUPERFAMILY RNA-binding domain, RBD 6 179 IPR035979 GO:0003676
Lele27g1069 262 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 251 - -
Lele27g1069 262 CDD RRM1_SF2_plant_like 8 79 - -
Lele27g1069 262 MobiDBLite consensus disorder prediction 221 262 - -
Lele27g1069 262 Gene3D - 109 186 IPR012677 -
Lele27g1069 262 FunFam serine/arginine-rich splicing factor SR34A-like 2 108 - -
Lele27g1069 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Lele27g1069 262 SMART rrm1_1 110 179 IPR000504 GO:0003723
Lele27g1069 262 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lele27g1069 262 Gene3D - 2 108 IPR012677 -
Lele27g1069 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lele27g1069 262 FunFam serine/arginine-rich splicing factor SR34A-like 109 186 - -
Lele27g1069 262 MobiDBLite consensus disorder prediction 185 262 - -
Lele27g1069 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lele27g1069 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1069 Lele-ChrLele27 18147054 18149871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1069 9 171 Eukaryotic Initiation Factors Gene Family AT4G34110 26.036 1.17e-08 53.5