Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1062 ATGGGTGAGGTCGTGTTGAGTTCTGAGAAGGTTCTGGAAGCGAAGGAGGTAGAGACCGAGACCAATAATCAGAAGGAGACGGCGGAGGAGGAAGAGAGTGGAACAGAGAGTAAAGATGAGGAATTGAATAATGGATTGATGAGGTGGAAGAAATTCCTGCCGAAGATGACATTGAGGGTGTTATTGGCTGAAGCTGATGATTCTACACGGCAGATTATAGCTGCGCTACTCAGGAAATGCAGCTACAGAGTGGTTGCTGTTTCTGATGGCTTGAAGGCATGGGAAATACTGAAGGGAAGACCACACAATGTTGATCTTATACTAACAGAAGTAGATTTGCCATCAATATCTGGCTATAGTCTTCTCACATTAATTATGGAGCATGAAGTTTGCAAAAACATTCCTGTTATTATGATGTCTTCGCAAGATTCAATCAACACAGTCTACAAATGCATGTTGAGAGGTGCTGCTGACTACCTTGTTAAGCCCCTTAGAAAAAACGAGCTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATATTCAACCTCTGGTGTAAACGGTCTTGAAGATGAGAGTGTTGCACAACCGAAGGCTGAAGCCACTGCTGAAAACAATGCTCCAGACAGTCGTTCAAGTGGCGATGCTGCACGTATTCAAAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCTTGTGGAAAGCCTGATTTGGAAGCTGAGAGTGCTCCGGTGGATCATGTGTACGAATCTTCCCAAACAAAACATGTTGAATCATACCCAAGAGAAAAAAAGATGCAGGAGATTGAAATGTGCATCCAAGTAGGCCAGACCTTGACCATGCATGACAATCACGCAGGAGGATTAACCGTTCTGATCCACAAAAATGGTGAGACCAATTCAGCTTATGGCAAGGATGGTGACCAAGAACATTTTACAAGTCCTGACACCAATCAGGATACTTATGACAATCGCAATGTTCAAATTACCTCTTCCAAGGAAGCTATTGACTTGCTTGGAGCATTTCGAAATCATCCAAACAGCAGTCAAAAAAGTTCCTCAGTCAATTGCACGGGCATGTTTGACTTTTCTCCTCAGCTGGATCTTTCCTTAAGAAGATCTCATCCCAGCAACTTTGAGAATGAAGCTACTAAAGAAAGGCATGCCCTGATGCATTCTAGTGGCTCAGCTTTCAGGAGGTATACTAATAGGCAAACACAAGCCCCGCCTGCAGTGTCCACAAACTGCTGCAATCAAGAAAGAGATCAGATAACAAATTGTGAGAACAGTATCTCAAACATTTTAGGCTATAACTCAGACAATTCAATGCCTAATTTGCAAAGAAGTCTTGTGTCTTCAGCTACACCGCTGTCAAAAGAATCTGAGCCCACTACTTCACCCTCCCAGGGTAGGCTTTCACTTCCAATCCCAGTAAAAGCTGTAAGGTACGATGATCCATGCACGGCCTATGGTTCTGCACTTCCTCCAATGTTCCATACACAATCAGGCCCCAAGTCAACACTAAATCCAGACTCAGTTCCACACCGTGAACCAACCTTTCAAGCGAATGGTTTTTATCAGTCAAATACCAAAGAAAACAACAGTTCGGAGCAGCTTTATGAACCTCAAGGTCAAAATGGAAACAACACAAGCCACATTGTGTACATGCGGGAAAGCAATTCAGAACACGTGGAGGATCGAAGACATATGTCTGCCACAACTGGTCAAAGTGCCTGCACGAACAGCAACGCCGACCAGGTTGCGATAGCCAGGGAAGCTTTAGAGAGCATGACTGAAGACTTCACAAATAATGGGATTTCTCATCGATCTCTCCAAAGAGAGGCAGCTCTAAACAAATTCCGCCTGAAACGAAAAGAGAGATGCTTTGAAAAGAAGGTTCGGTATGAAAGCAGAAAGAAACTTGCAGAACAGCGTCCTAGAGTGAAGGGACAATTTGTTCGTCAAGTGCAGCAAGATTCGCAGGCTGCGGAAACAGTTGGTTGA 2013 0.4391 MGEVVLSSEKVLEAKEVETETNNQKETAEEEESGTESKDEELNNGLMRWKKFLPKMTLRVLLAEADDSTRQIIAALLRKCSYRVVAVSDGLKAWEILKGRPHNVDLILTEVDLPSISGYSLLTLIMEHEVCKNIPVIMMSSQDSINTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQYSTSGVNGLEDESVAQPKAEATAENNAPDSRSSGDAARIQRNKELIEKGSDAQSSCGKPDLEAESAPVDHVYESSQTKHVESYPREKKMQEIEMCIQVGQTLTMHDNHAGGLTVLIHKNGETNSAYGKDGDQEHFTSPDTNQDTYDNRNVQITSSKEAIDLLGAFRNHPNSSQKSSSVNCTGMFDFSPQLDLSLRRSHPSNFENEATKERHALMHSSGSAFRRYTNRQTQAPPAVSTNCCNQERDQITNCENSISNILGYNSDNSMPNLQRSLVSSATPLSKESEPTTSPSQGRLSLPIPVKAVRYDDPCTAYGSALPPMFHTQSGPKSTLNPDSVPHREPTFQANGFYQSNTKENNSSEQLYEPQGQNGNNTSHIVYMRESNSEHVEDRRHMSATTGQSACTNSNADQVAIAREALESMTEDFTNNGISHRSLQREAALNKFRLKRKERCFEKKVRYESRKKLAEQRPRVKGQFVRQVQQDSQAAETVG 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1062 670 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Lele27g1062 670 Pfam CCT motif 616 658 IPR010402 GO:0005515
Lele27g1062 670 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
Lele27g1062 670 MobiDBLite consensus disorder prediction 499 584 - -
Lele27g1062 670 CDD psREC_PRR 60 163 - -
Lele27g1062 670 Coils Coil 11 31 - -
Lele27g1062 670 MobiDBLite consensus disorder prediction 455 476 - -
Lele27g1062 670 MobiDBLite consensus disorder prediction 12 40 - -
Lele27g1062 670 MobiDBLite consensus disorder prediction 307 326 - -
Lele27g1062 670 Gene3D - 56 288 - -
Lele27g1062 670 SUPERFAMILY CheY-like 58 186 IPR011006 -
Lele27g1062 670 MobiDBLite consensus disorder prediction 502 560 - -
Lele27g1062 670 MobiDBLite consensus disorder prediction 199 215 - -
Lele27g1062 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 58 324 IPR045279 GO:0009736
Lele27g1062 670 ProSiteProfiles CCT domain profile. 616 658 IPR010402 GO:0005515
Lele27g1062 670 MobiDBLite consensus disorder prediction 654 670 - -
Lele27g1062 670 MobiDBLite consensus disorder prediction 455 475 - -
Lele27g1062 670 MobiDBLite consensus disorder prediction 187 248 - -
Lele27g1062 670 MobiDBLite consensus disorder prediction 642 670 - -
Lele27g1062 670 SMART REC_2 58 173 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1062 Lele-ChrLele27 18111253 18115286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1062 44 660 Response Regulator Gene Family AT5G24470 41.374 2.09e-128 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele27g1062 Response_reg 4.2e-20 CL0304