Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1026 ATGGGAACATCAGGGCCTGATAGGACAGATCAACACACCATTTCTTCATCATCGTCTTCTGCCGGAGTTGTAAATACTTCTGATGGTAACAACAACACTGCCAGTGCTGGAAGTGGAACGTGGTATGGGGTGCGGTTGCCTTCTTTACTCTCATTTTTACTGGCTTACTCTGACCGTATTCGCACGAGCTCGCCAATCGGCTATTATGAGTCTGTAATTGACCACGACGAAGCTACCGCTTCTGAATTACGCCCTGATCGTCAAACTTCTTCCTCGGGTTCTGCCGCCGTAACCATTTGCAGTGGCTGTAGCAGCGAGAACAGTTCCGGGGAAGTTACAGTACGAATTAGTGGAGCAGTTGAACGGAATGACAATGCAGGGGTGGGTTCTGTTTCTTCAGCGTCCCAAAATCAGCCTGTAGACGACGACGATTTGATGGGAAATAAAGGTGGAATGCCTGTTCTGAATGAGGATGCTGAGGGTAGCAGTGGAATTATGGCTAGTGAGAGAGCTCCTCTAGTGTCCTCATCAATGTCTATGGCAGGTAGTACCAGTGGACAAGATGATATTGATGCTGGGAATGGCTTTGAACGTAATCTTCGGGGTTTATCGTCTCATGAAAGTAATGATTTTCAGCAACTTGCTAAATTGCTTGAGCAGGTTCTTCCTTTCTCGCTGTTGTTGTTGGTTGTGTTCATTCGCCAGCATTTGCAAGATTTCATCATCACAATTTGGATTTCAATTGTGATGTTCAAGTCAAATGAAATGGTTAAGAAGCAGACAGCTCTAAAGGGAGATAGGAAAGTCTCAGTTCTCATCGGTATCTCATTTGTCTTCATGATTCATGTGATGTGCATTTACTGGTGGTATCAAGATGATGATCTTTTATACTCACCACTCCTCTTGCTTCCTCCAAAAGCAACACCTCATTTCTGGCATGCAATATTCATCGTTCTGATTAACGATGTACTTGTGCGGCAAGCAGCGATGTCTTTCAAGTGCTTGATACTTATATATTTTAAAAATGACCGAGGTCACAGCTTCCGTCTGCAGGCTCAAATATTAACTCTGGTTGAGCACGCGCTGCTGTTGTACCGTACCTTCTTGCCAGCGCCTGTTTGGTACCGATTTTTCCTAAACAGGGAATATGGAAGTCTCTTTTCTTCGCTGACCACGGGGTTGTATCTAACCTTCAAGTTAACATCCATTGTTGAGAAGGTCCAATGCTTCTTTTCTGCCTTAAAAGCATTATCCGGCAAGGATATTCTCTATGGCGTATATGCTACAAAGGAACAGGTAAATGCCGCGGGCGACCTCTGTGCTATATGCCAAGAGAAGATGCGCGGTCCTATCCTGTTGCGCTGCAAACACATTTTCTGTGAAGAGTGTGTGTCAGAATGGTTTGACAGAGAAAGAACTTGTCCACTGTGTAGAGCATTGGTGAAGGCCGGCGATATTCGGTCTTTCGGGGATGGGTCAACAAGTCTGTTTTTCCAGTTATGTTAA 1506 0.4495 MGTSGPDRTDQHTISSSSSSAGVVNTSDGNNNTASAGSGTWYGVRLPSLLSFLLAYSDRIRTSSPIGYYESVIDHDEATASELRPDRQTSSSGSAAVTICSGCSSENSSGEVTVRISGAVERNDNAGVGSVSSASQNQPVDDDDLMGNKGGMPVLNEDAEGSSGIMASERAPLVSSSMSMAGSTSGQDDIDAGNGFERNLRGLSSHESNDFQQLAKLLEQVLPFSLLLLVVFIRQHLQDFIITIWISIVMFKSNEMVKKQTALKGDRKVSVLIGISFVFMIHVMCIYWWYQDDDLLYSPLLLLPPKATPHFWHAIFIVLINDVLVRQAAMSFKCLILIYFKNDRGHSFRLQAQILTLVEHALLLYRTFLPAPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSIVEKVQCFFSALKALSGKDILYGVYATKEQVNAAGDLCAICQEKMRGPILLRCKHIFCEECVSEWFDRERTCPLCRALVKAGDIRSFGDGSTSLFFQLC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1026 501 MobiDBLite consensus disorder prediction 126 142 - -
Lele27g1026 501 SUPERFAMILY RING/U-box 434 482 - -
Lele27g1026 501 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 19 500 IPR044235 GO:0061630|GO:1904294
Lele27g1026 501 CDD RING-HC_RNFT1_like 439 478 - -
Lele27g1026 501 Pfam Zinc finger, C3HC4 type (RING finger) 438 481 - -
Lele27g1026 501 ProSitePatterns Zinc finger RING-type signature. 455 464 IPR017907 -
Lele27g1026 501 ProSiteProfiles Zinc finger RING-type profile. 440 478 IPR001841 -
Lele27g1026 501 MobiDBLite consensus disorder prediction 1 38 - -
Lele27g1026 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 487 IPR013083 -
Lele27g1026 501 SMART ring_2 440 477 IPR001841 -
Lele27g1026 501 MobiDBLite consensus disorder prediction 124 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1026 Lele-ChrLele27 17868352 17872295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1026 87 500 C3H Transcription Factor Family AT5G01960 57.729 6.99e-171 487