Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1025 ATGATATTAACAAATAATTCAAATTTACGTGGAGTCATACGTGGCTTTATCTGCGCTGTATTTTGTTTTTGTTATGTGCATTTTTTAGCTATTCGTGCTATTCGATCTGTGCAAGTCATGATTTTGAATGTTACACAGATTGGACCAGCAAGGTGCTACAGGCAAATTAAAAACAAACCTTACCCAAAATCACGTTTCTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTACGATGTTGGGATGAAAAAGAAAGGCGTTGATGAGTTTCCTTTCTGCGTCCATCTTGTTAGTTGGGAGAAAGAAAACGTTTCAAGTGAGGCGCTGGAAGCTGCTAGGATTGCTTGCAACAAATACATGGCTAAATTTGCCGGAAAGGATGCATTCCACTTGAGGGTTAGGGTACATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACAGGAATGAGAGGTGCATTTGGAAAGCCCCAAGGAACATGTGCTAGAGTGGCCATTGGTCAGGTTCTGCTTTCTGTTCGATGCAAGGACAGCAACAGCCATCATGCTCAGGAGGCCCTCCGTCGTGCTAAGTTCAAGTTCCCTGGCCGCCAAAAGATCATTGTTAGCAGAAAATGGGGCTTCACTAAATTTAGCCGTACTGACTATGTGAGGTTCAAGTCAGAGAACAGGATCGTGCCGGATGGTGTAAATGCCAAGCTTCTTGGATGCCATGGACCTTTGGCTAACCGTCAGCCTGGAAGAGCTTTTCTGCACGCAATTTCTTAG 795 0.4403 MILTNNSNLRGVIRGFICAVFCFCYVHFLAIRAIRSVQVMILNVTQIGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYVRFKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLHAIS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1025 264 Pfam Ribosomal protein L16p/L10e 56 210 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele27g1025 264 PANTHER 60S RIBOSOMAL PROTEIN L10 49 257 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele27g1025 264 FunFam 60S ribosomal protein L10 46 250 - -
Lele27g1025 264 Gene3D Ribosomal protein L10e/L16 47 261 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele27g1025 264 SUPERFAMILY Ribosomal protein L16p/L10e 49 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele27g1025 264 CDD Ribosomal_L16_L10e 85 210 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele27g1025 264 ProSitePatterns Ribosomal protein L10e signature. 152 173 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele27g1025 264 TIGRFAM uL16_euk_arch: ribosomal protein uL16 49 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1025 Lele-ChrLele27 17860592 17863614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1025 49 264 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.574 1.00e-140 392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0124 02 724859 731086 Lele27g1025 27 17860592 17863614 CCT
Lele03g0127 03 712995 715729 Lele27g1025 27 17860592 17863614 CCT
Lele25g1049 25 6802125 6804521 Lele27g1025 27 17860592 17863614 hybridization
Lele26g1056 26 6845700 6848214 Lele27g1025 27 17860592 17863614 hybridization