Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1010 ATGGCTGCCACTGCTAGTGTAGGCAGAAAGAAACTCAGTCACGGCTCTCTGCAAACACCTTTCTTTAAATCCATCCAGTGTTTAGTTATTGTATTCCTAGGTCCTTGTCTTCACTGTACACCTAATGTTATTCCAGTTGATGGTTTAGAAAGTGATGTCAAGAGTCTATACTTGAATATCTCAAAGGCATCAGGACATGGGCTCAATAACAGTAACGAGGGAAATGGTGATGAAGTGGGTAGCATTGCAGAAACTTCCCCTGACGCCTCTTTTGAGGTTCTCAAGGGTTCAAATGACGAACTCTCTGTAAAGTCTGTGCTCTTAGGCAAGGGTTTGAAACCATCTGAAGCTGATATTATAGTTTTTCTGCTGTTAATTCCTCCCTGGGAAAAACTGCCACATGTATTGAGATGGATGGATTACATTCAGCACAAGGAAGATTTTGGAGATTTATTTGAGAAAATATTGGTGCGTGTGCCTGAATTTGAGCCTCTGATAGCAAAACCTATGGCAGCTGCTGAAGCTGATTCAAAAGAATCAAAAGCAAAAAAGACTGAGCAAAGCACTAAGAATATAAACAAACCAGAAAAAGAAGAAAAGGTAACAGGAGACAAGGATGCTGCTAAAGGGAGTACGAAACCTGCTCAAACAGAAGTGCCGGAGAAAGATAAAGAACTTAGTGTCAGTTTGCTAAATATTCGGGTCGGACAAATTTGTAAAGCATGGAAGCATCCATCAGCGGATAGTCTGCTAGTTGAGGAGATGGATGTTGGGAATGTCAAATTGCGGCAAGTTGTCAGTGGATTGGCAAAGTTTTGTAGCCCTGAAGAGTTTACGAACTGTCGTGTTGTACTTATTACAAATGTCAAACCTGGAAAACTAAGAGATGTTATGTCAGAGGGACTGTGCATGCATTTGACTCCTATTTCCCAGGTCCTATGTGCTTCTAATGAAGATCATACGGTTGTGGAGCCCTTGCTTCCTCCAGAAGGGGCTAAAATTGGAGAGCGTGTTTCATTTTCCGGGATTGATGGGAAGCCAGAAGATGTACTTAACCCAAAGAAGAAACAGCTGGAGAAGATTACACTGGTCTCATTTCACAAAGAGCTAAGAGCTAAGGGGATTCTTCTGATGGGGCTGAACGAACCTCTTAGCAGTATTCAAGCAGACCTCCCTCCTCCTCCTCCTCGGTTATTTATTATATGTGTTTCTAAGATTCAAAAAACCTATATGACTTCTTCTTCCTCTTCCTCTTCCTCACCAAATTGGGCCATGGAAAATGGAGTTATGCCCCATGTTTTAGCTGTTGATGACAACCTCATTGACCGCAAACTCGTTGAGAAGCTCCTCAGAAATTCTTCTTGCAAAGTGACAACTGCAGAAAATGGACCAAGGGCATTGGAGCTTCTGGGGTTGGCAAGTGATGAAGAAAACACCATGAAGGGCACTGGATCCAAAGTGAATATGATTATCACAGACTATTGTATGCCTGGGATGACAGGATATGAGCTACTCAAGAAAATAAAGAAATCATCAATCATGAAGGAGGTTCCAGTGGTGATCATGTCATCTGAGAACATCCCAACTAGGGTGAACAAGTGTTTGGAGGAAGGTGCTCAGATGTTCATCCTAAAACCCCTCAAACAATCTGATGTAAAGAAGCTGACATGTCAACTGATGAATTGCAGAGGCTAG 1695 0.4224 MAATASVGRKKLSHGSLQTPFFKSIQCLVIVFLGPCLHCTPNVIPVDGLESDVKSLYLNISKASGHGLNNSNEGNGDEVGSIAETSPDASFEVLKGSNDELSVKSVLLGKGLKPSEADIIVFLLLIPPWEKLPHVLRWMDYIQHKEDFGDLFEKILVRVPEFEPLIAKPMAAAEADSKESKAKKTEQSTKNINKPEKEEKVTGDKDAAKGSTKPAQTEVPEKDKELSVSLLNIRVGQICKAWKHPSADSLLVEEMDVGNVKLRQVVSGLAKFCSPEEFTNCRVVLITNVKPGKLRDVMSEGLCMHLTPISQVLCASNEDHTVVEPLLPPEGAKIGERVSFSGIDGKPEDVLNPKKKQLEKITLVSFHKELRAKGILLMGLNEPLSSIQADLPPPPPRLFIICVSKIQKTYMTSSSSSSSSPNWAMENGVMPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLASDEENTMKGTGSKVNMIITDYCMPGMTGYELLKKIKKSSIMKEVPVVIMSSENIPTRVNKCLEEGAQMFILKPLKQSDVKKLTCQLMNCRG 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1010 564 CDD tRNA_bind_EMAP-II_like 226 339 - -
Lele27g1010 564 PANTHER TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER 54 363 - -
Lele27g1010 564 ProSiteProfiles tRNA-binding domain profile. 227 339 IPR002547 GO:0000049
Lele27g1010 564 MobiDBLite consensus disorder prediction 171 221 - -
Lele27g1010 564 Gene3D - 227 373 IPR012340 -
Lele27g1010 564 MobiDBLite consensus disorder prediction 174 207 - -
Lele27g1010 564 Pfam Response regulator receiver domain 433 554 IPR001789 GO:0000160
Lele27g1010 564 CDD REC_typeA_ARR 433 555 - -
Lele27g1010 564 Gene3D - 429 562 - -
Lele27g1010 564 SUPERFAMILY GST C-terminal domain-like 89 152 IPR036282 -
Lele27g1010 564 SUPERFAMILY Nucleic acid-binding proteins 229 362 IPR012340 -
Lele27g1010 564 SMART REC_2 431 556 IPR001789 GO:0000160
Lele27g1010 564 SUPERFAMILY CheY-like 430 560 IPR011006 -
Lele27g1010 564 Pfam Putative tRNA binding domain 233 336 IPR002547 GO:0000049
Lele27g1010 564 ProSiteProfiles Response regulatory domain profile. 432 560 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1010 Lele-ChrLele27 17757274 17766944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1010 432 563 Response Regulator Gene Family AT3G56380 72.180 2.70e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele27g1010 Response_reg 4.2e-21 CL0304