Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1009 ATGCGAGTGCTCCCTGTTTCCGATAATGCGAGCCGTTTTGAATATGAGAGCTCTTTCCTACTTGTTCTTGTTGCTTCTTATAGGTCCGGGGTTGGTGGTGGTTTCTGTGAGATTCCTGAATGGATTGGGGAAATGAAAAGCCTTGAGACATTGGACGTTTCTCGGAATAGATTTTCAGACATTCCAACCTCATTTGTTAACTGCACTTCTTTGTCGACTTTAATTCTATCACAGAACAGCTTGACTGGTTCAATACCTGCAGCAATGGCAAAACTGACCAATTTACAAGTTGTGGACTTGTCTTTGAACAATTTTACTGGAAACATTCCCAAGCAATTGGCCAATCTGCCCAATCTTCTTTCCTTTAATATATCTCATAACAACCTAAAGGGTGAACTACCAGCTGGCCCCTTTTTCAATACCATTTCACCTTCCTATCTTACTGGCAATCCATCCCTTTGTGGTGCTGCTGTCAAGAAATCATGCCCTTCCGTCCTTCCAAAGCCTATTGTCCTAAATCCAAACGCCACTTCTGATTATGCTCCAGGGTCATTACCACCCAACGTTGGTCACAAGAGAATTATTCTCAGCATTTCTGCTCTAATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTGCCATCACTGTTCTTAATCTCCGTGTTCGGTCCTCTGCATCTCAAGCTCCGGCTGCCCTCACATTTTCTGGAGGGGAAGAATATAGCCGTTCCCCAACTACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCAGGTGAGCCAGACTTCAGCACTGGGGCACATGCCTTGCTTAACAAGGATTGTGAACTTGGGCGTGGTGGGTTTGGAGCAGTGTATCAAACAGTTCTTAGGGATGGTCATGCAGTTGCAATCAAGAAGCTCACTGTGTCAAGTCTTGTCAAGTCTCAGGATGATTTTGAAAGAGAAGTGAAGAAACTAGGGAAAGTCAGACACCAAAATCTTGTGGCACTTGAAGGTTACTATTGGACCCCATCCCTACAGCTCCTCATATATGAGTTTGTTTCTGGTGGCAGCCTGTATAAGCATCTCCATGATGGATCAGGTGGAAATTTCCTCTCATGGAATGAGAGGTTTAATATAATTCTTGGCACAGCAAAAGCCTTGGCTCATTTGCATCACATGAACATTATCCACTACAACATCAAGTCTACCAATGTCCTAATTGATGGCTATGGCGAAGCCAAAATGGGTGACTTTGGCCTAGCAAGATTATTACCGATGCTTGACCGTTATGTTTTGAGCAGCAAAATTCAAAGTGCTCTTGGCTACATGGCGCCAGAATTTGCCTGCCGTACTGTGAAGATAACAGAGAAATGTGATGTGTATGGGTTTGGAGTTTTGGTCTTGGAGGTGGTCACAGGGAAGAGGCCAGTTGAATACATGGAGGACGACGTGGTGGTGCTCTGTGACATGGTCAGAGGAGTTTTGGAAGAAGGAAGGGTGGAAGAATGTATTGATGGGAGGCTGCAGGGTAAGTTCCCGGCCGAGGAAGCCATTCCTGTGATGAAACTAGGCTTAATATGCACTTCACAAGTTCCCTCAAACCGACCAGATATGGGAGAGGTAGTCAATATATTGGAGCTAATTAGATGTCCCTCAGAAGGACAAGAGGAGCTTGCATGA 1671 0.4488 MRVLPVSDNASRFEYESSFLLVLVASYRSGVGGGFCEIPEWIGEMKSLETLDVSRNRFSDIPTSFVNCTSLSTLILSQNSLTGSIPAAMAKLTNLQVVDLSLNNFTGNIPKQLANLPNLLSFNISHNNLKGELPAGPFFNTISPSYLTGNPSLCGAAVKKSCPSVLPKPIVLNPNATSDYAPGSLPPNVGHKRIILSISALIAIGAAAVIVIGVIAITVLNLRVRSSASQAPAALTFSGGEEYSRSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHAVAIKKLTVSSLVKSQDDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKHLHDGSGGNFLSWNERFNIILGTAKALAHLHHMNIIHYNIKSTNVLIDGYGEAKMGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGVLEEGRVEECIDGRLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1009 556 SUPERFAMILY L domain-like 35 155 - -
Lele27g1009 556 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 39 162 - -
Lele27g1009 556 Gene3D Transferase(Phosphotransferase) domain 1 350 554 - -
Lele27g1009 556 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 41 545 - -
Lele27g1009 556 ProSitePatterns Protein kinases ATP-binding region signature. 279 302 IPR017441 GO:0005524
Lele27g1009 556 SUPERFAMILY Protein kinase-like (PK-like) 276 546 IPR011009 -
Lele27g1009 556 Gene3D Phosphorylase Kinase; domain 1 266 349 - -
Lele27g1009 556 Pfam Leucine rich repeat 70 129 IPR001611 GO:0005515
Lele27g1009 556 ProSiteProfiles Leucine-rich repeat profile. 47 68 IPR001611 GO:0005515
Lele27g1009 556 Pfam Protein tyrosine and serine/threonine kinase 275 541 IPR001245 GO:0004672|GO:0006468
Lele27g1009 556 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 267 349 - -
Lele27g1009 556 Gene3D Ribonuclease Inhibitor 19 166 IPR032675 -
Lele27g1009 556 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 350 551 - -
Lele27g1009 556 ProSiteProfiles Protein kinase domain profile. 273 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1009 556 CDD STKc_IRAK 279 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1009 Lele-ChrLele27 17740819 17744433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1009 38 556 Receptor kinase-like Gene Family AT3G56370 72.029 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Lele27g1009 PK_Tyr_Ser-Thr 4.5e-41 CL0016