Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1008 ATGCCATTCTCCACACAGCAGTGTCTCGAAACCCATGCTCATAGATTCTCTTCACTGTTTCCCATATTCAACATCGCAGTGCGTATTATTATGTCGTCGGAAGAAATTGGTCCAGATCAAAGGATCGATAACGGTCTTCATTCACCCCTAGTGTTCCAAGACGACCCCTTGCGTTACAGCTGCGGTGCCCCACAACGTCGGGTCGGGGACCCAGGTTCGAAAACGAGGGAGCTTGGTGGTTTCCTTGATGAAAAGATGTTCGCTGTGGACCGTGAACGCTTTTTAGCGGCTCAGGGATTGGAGTTCCGTCGTAATGTTTACGGGGATTGCTCAGACCAGCGGAACCCACCGGACGCCCGGAATTGGAACGGGAGCGCTGCTACTCCTAGCGGCGATGAATCGGACGGCGAGGATGATGAAGACGATGAGGAAGATGACGACGACGATGATGTTGAGGGTGGCGCTGAAGTAGAAAGACTAGTTGGTGTTAACGATGCAAGCAAAGGGAATTCCAATCACAATTCAATGAACGATATTAACAATAACAGCATCAGTGGTGGTAACCTGGCTAGTGCTGCAGATGGAATACCGAACGGAAAAGATCAACGTCATTCGCCCTACGGATCCAGTAGAGAGTTATTGGGGAAGGATGGAGAAATTGGGCCGGCGCAGAATAATTCAAGGGGTAACGACGAAGATCATCAGCAAGAAAGGTTAGATAAATCGCAGAGTGCAGTCACGATTGCCGAAACTGATTGTGAGGAGTATTATTCACACTATCTTCAAGGCACGGAGGGCTCAGCTTCTGTGCAGAAAGCTATAGCAGGGGAAAATGGTTGCGGATTTAGCGGAAGGAAGGATGTTATCTATTCAAGCGAGTCAGTCGAGTCATTGAGGGCAGTGCTTTCAGATCCTATAACGGGAGCTCTTATGGATGACGCAATGATATTGCCTTGTGGACATTCCTTTGGTGGAGGAGGAATACAGCATGTTATTAGAATGAAAGCTTGTTGCACTTGTTCCCAACCCATATCTGAAGACTCAATATCTCCAAATCTAACACTTAGAGTTGCTGTGCAGGCATACTGTCGGGAAGAGGAGTCACAGTTTTACCGATCGTTCAAAAGAAGAAGAGAAAGATTTGATCAGGCGTGACAGGCTGGTTATGGTGATTCAACAGTTATGGAACAACCGAGAGGCAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGGGTTATTATAAAGCTAATGATCGGAGCAAAATTGGATCAGGGGAACAAGAGGACACCGCAGCGTTTTGTCGGACGGGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTATGTGGTGAAGACGTTGGACAATGCAGAGAGTGTTAAATTGCAGTATCGGTCGCTGGCTAAGGTTTCAGATGACCCTTCAAAACCAGCCTCCAGCAAGGTGGGACCTACTAATTGGCTTTAA 1470 0.4755 MPFSTQQCLETHAHRFSSLFPIFNIAVRIIMSSEEIGPDQRIDNGLHSPLVFQDDPLRYSCGAPQRRVGDPGSKTRELGGFLDEKMFAVDRERFLAAQGLEFRRNVYGDCSDQRNPPDARNWNGSAATPSGDESDGEDDEDDEEDDDDDDVEGGAEVERLVGVNDASKGNSNHNSMNDINNNSISGGNLASAADGIPNGKDQRHSPYGSSRELLGKDGEIGPAQNNSRGNDEDHQQERLDKSQSAVTIAETDCEEYYSHYLQGTEGSASVQKAIAGENGCGFSGRKDVIYSSESVESLRAVLSDPITGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPISEDSISPNLTLRVAVQAYCREEESQFYRSFKRRRERFDQAXQAGYGDSTVMEQPRGRGVQFPFAVMDRVIIKLMIGAKLDQGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPASSKVGPTNWL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1008 489 MobiDBLite consensus disorder prediction 165 189 - -
Lele27g1008 489 MobiDBLite consensus disorder prediction 107 244 - -
Lele27g1008 489 MobiDBLite consensus disorder prediction 132 154 - -
Lele27g1008 489 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 51 483 - -
Lele27g1008 489 ProSiteProfiles U-box domain profile. 297 369 IPR003613 GO:0004842|GO:0016567
Lele27g1008 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 367 IPR013083 -
Lele27g1008 489 MobiDBLite consensus disorder prediction 116 130 - -
Lele27g1008 489 SUPERFAMILY RING/U-box 293 369 - -
Lele27g1008 489 Pfam U-box domain 303 367 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1008 Lele-ChrLele27 17733047 17736442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1008 242 489 Plant U-box Gene Family AT5G05230 59.127 5.79e-93 285