Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1003 ATGGCTCGCCTACTGCTAAGCGCAGATTTAACCTCAACCCCATCAGGTAATGGCAACAGAACAGGGGGTCTTAACACTAGTGATGCCAATTTTGACACAAACATGGTGATTATACTAGTAGCCTTGCTCTGTGCACTAATATGTGCCTTAGGGCTGAACTCAATTGTAAGATGTGCTTTGAGATGCAGTAGCAGGTTTGCTTTTGAGACACCAGATGAGGCTGCAGCTCGTGTAGCCGCAAAAGGGTTGAAGAAGAGTGTATTGCGTCAGATCCCTATAGTTGTATATGGTTCATCAGGTTCTACGGATATTGGAGCCACTGAGTGTCCAATTTGCCTAGGAGAGTTTGTGGATGGAGAGAAAGTTAGGGTTCTTCCAAAGTGCAACCATGGATTCCATGTGAGTTGCATAGACACGTGGCTTCTCTCACATTCTTCTTGCCCTATTTGCAGACAGTCTTTGCTTGATCAACGACATAGGGCAAACACTTCTGGTTCTTCTGGGGATGTATAG 513 0.4542 MARLLLSADLTSTPSGNGNRTGGLNTSDANFDTNMVIILVALLCALICALGLNSIVRCALRCSSRFAFETPDEAAARVAAKGLKKSVLRQIPIVVYGSSGSTDIGATECPICLGEFVDGEKVRVLPKCNHGFHVSCIDTWLLSHSSCPICRQSLLDQRHRANTSGSSGDV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1003 170 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lele27g1003 170 SMART ring_2 109 150 IPR001841 -
Lele27g1003 170 SMART FANCL_C_2 105 156 - -
Lele27g1003 170 FunFam RING-H2 finger protein ATL72-like 74 155 - -
Lele27g1003 170 SUPERFAMILY RING/U-box 108 157 - -
Lele27g1003 170 CDD RING-H2_PA-TM-RING 108 151 - -
Lele27g1003 170 Pfam Ring finger domain 108 151 IPR001841 -
Lele27g1003 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 156 IPR013083 -
Lele27g1003 170 PANTHER RING-H2 FINGER PROTEIN ATL78 25 163 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1003 Lele-ChrLele27 17709155 17709667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1003 1 155 C3H Transcription Factor Family AT3G10910 60.123 4.57e-60 182