LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g0982	ATGCAATATATTGGCACTGGTTTTTGCTTCTTTGTTCTCATCCTTCGTTCCGATCTCTCCCACCCTTTTCCTTTCCTTCAACGTTTGGGAGGCAGCCCATACTCGATCTTGATGAGGTTAAGGCTCGATTCACAGTCCGATGATTCTCTGGCTGCAGATATCTCTGATGAAGAAAGGATTATTTCTGAGAATCTCTGGGGAAATGTGCTGATGCAAAAGCACGAGTTTGGAAGGTTATTAGGTCAAGGAAATTTTGCAAAGGTTTACCATGCAAGGGACATTAGAACTGGTGAAAATGTTGCCATTAAGATGATTGATAAGGAGAGGATTCTAAAAGCTGGTCTATTTGATCAAACAGAGCGAGAAATTTCAGTCATGGGACTGATTAAACATCCAAATGTACTGAAGATTTATGAGGTATTGGCCACCAAAACCAAGATTTACTTCATCATGGAATATGCCAAAGGGGGTGAACTCTTCAGGAAGCTGACTAAAGGTAGACTCCATGAAAACTTGGCAAGGCAGTACTTTCAACAATTGATCAGCGTGATAGATTGTTGCCCCAGAAATGGGGTTTATCATAGGGATTTGAAGCCAGAGAATTTACTTTTGGATGAGAATGGAAATCTCAAGGTTGCAGATTTTGGATTGAGTGCCTTTGTTGAATCTCATCGCCAAGGAAGCTTACTGCACACAACTTGTGGAACTCCTGCATATGTAGCTCCTGAAGTTATAAGCCAAAACGGCTATGATGCAGCAAAAGCTGACATATGGTCTTGTGGGGTGGTCTTATATGTTCTCTTGTCTGGTCGATTGCCATTCCGTGATGTGAATCTTATCAAATTGTACAGGAAAATGTGTTCAGGAAAGTACAAATGTCCAATCTGGTTTTCATTCGAAGCACGCAGGCTTTTGTTCAGAATCCTTGACCCTAACACTGATACTAGAATTTCCATATCGAAGATTATGGAAAGTTCCTGGTTCAGAAAAGGATTCGGTTCAAAGGCTGATATATTGAAAACATCGATTACAGATGTGGAGGATTCAATCAAGGCTGATGATCCAAATCTTGGTCTATCTGAGAATGAAAGTGGTACTACATCTGAGGCTAATCATCAGGCATTGGTACAACCTACTAATTTGAATGCTTTTGATATAATTTCTCTATCAGCTGGCTTTGATTTGTCTGCCTTTTTGCAAGAAACAATGAAAGGAAAGATGTGA	1224	0.4028	MQYIGTGFCFFVLILRSDLSHPFPFLQRLGGSPYSILMRLRLDSQSDDSLAADISDEERIISENLWGNVLMQKHEFGRLLGQGNFAKVYHARDIRTGENVAIKMIDKERILKAGLFDQTEREISVMGLIKHPNVLKIYEVLATKTKIYFIMEYAKGGELFRKLTKGRLHENLARQYFQQLISVIDCCPRNGVYHRDLKPENLLLDENGNLKVADFGLSAFVESHRQGSLLHTTCGTPAYVAPEVISQNGYDAAKADIWSCGVVLYVLLSGRLPFRDVNLIKLYRKMCSGKYKCPIWFSFEARRLLFRILDPNTDTRISISKIMESSWFRKGFGSKADILKTSITDVEDSIKADDPNLGLSENESGTTSEANHQALVQPTNLNAFDIISLSAGFDLSAFLQETMKGKM	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g0982	407	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	68	399	-	-
	Lele27g0982	407	Gene3D	Transferase(Phosphotransferase) domain 1	67	388	-	-
	Lele27g0982	407	FunFam	Maternal embryonic leucine zipper kinase	67	354	-	-
	Lele27g0982	407	Pfam	Protein kinase domain	77	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g0982	407	SMART	serkin_6	74	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g0982	407	ProSitePatterns	Protein kinases ATP-binding region signature.	80	112	IPR017441	GO:0005524
	Lele27g0982	407	SUPERFAMILY	Protein kinase-like (PK-like)	66	332	IPR011009	-
	Lele27g0982	407	Pfam	NAF domain	378	401	IPR004041	GO:0007165
	Lele27g0982	407	FunFam	Non-specific serine/threonine protein kinase	66	153	-	-
	Lele27g0982	407	ProSiteProfiles	NAF domain profile.	376	400	IPR018451	GO:0007165
	Lele27g0982	407	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	192	204	IPR008271	GO:0004672\|GO:0006468
	Lele27g0982	407	ProSiteProfiles	Protein kinase domain profile.	74	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g0982	Lele-ChrLele27	17578539	17580362	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g0982	67	401	CBL-interacting serine-threonine protein kinases	AT5G45820	60.119	8.81e-146	419

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Lele27g0982		Pkinase	3.6e-67	CL0016