Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0973 ATGTCAGTTCATTCATGGGTTTCTGAACACAAGCTTGCTTCCATTGGGGCAGTATGGGCCACAGGAATAGGGGCATCCTTCCTGGCTAATTCACGCAAAACCTCTGCTCCTTCTATGAAACCAAGTCTCAGACTTATTCATGCCAGAATGCATGCTCAGGCGTTAACACTGGCTGTGCTCTCTGGTGCTGCCGCTTATCACTACTATGAGAAGAATCGTCTTTCTTCTGATCCTCAAACCCCAAAACCACAGGCTGAGACTACTCGTGCTGATATCAGAAACTTGGTTGAGTGGGAGCTCCTTTCTCCTTTCTAA 315 0.473 MSVHSWVSEHKLASIGAVWATGIGASFLANSRKTSAPSMKPSLRLIHARMHAQALTLAVLSGAAAYHYYEKNRLSSDPQTPKPQAETTRADIRNLVEWELLSPF 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0973 104 Pfam Hypoxia induced protein conserved region 9 62 IPR007667 -
Lele27g0973 104 ProSiteProfiles HIG1 domain profile. 1 78 IPR007667 -
Lele27g0973 104 PANTHER RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL 2 79 IPR040153 -
Lele27g0973 104 Gene3D - 12 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0973 Lele-ChrLele27 17511262 17511763 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1104 26 7144459 7145464 Lele27g0973 27 17511262 17511763 CCT
Lele27g0972 27 17508177 17509198 Lele27g0973 27 17511262 17511763 CCT
Lele28g1098 28 7129832 7130828 Lele27g0973 27 17511262 17511763 CCT
Lele25g1104 25 7149221 7149722 Lele27g0973 27 17511262 17511763 CCT
Lele27g0973 27 17511262 17511763 Lele27g0973 27 17511262 17511763 ECH
Lele25g1104 25 7149221 7149722 Lele27g0973 27 17511262 17511763 hybridization