Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0972 ATGGATTGCTCTGTATGCACAACAATGCCATTGATATTAAGGCCACCAAGGAACACCATATGTGGGGCCTGTTATGAAGGAGCCAGAAGCATTCTGAATGTGATAAACAAGCTTGAATCTGATAAAACAATGGATAATCCTACTGCCTCCCCTGCTTCACCCTCCCATAACTCGAGTAAGTCACTTTCAGCATTTAAAAGATGGTATACGCAGCAGTTAGATCAGATGAATGAACATAAACATCAAGTAGCCTTCCTTGAAAGCTTTGTTGATGCATTCAGAGAACAAACCCATACCGATATAACTGTCACTCCTGGAAATAATGGCCCTCCAATACCTTCCCATAAAGCAGTTTTGGCGACAAGGTCAGAGGTTTTCAAGAACATGTTAGACTCAGATGAATGCAAAGCTGCACCAACTGACAACATTACAATACCTGAATTGAACTACGAAGAGCTGGAGAGCCTTCTGGAGTTTCTCTACAGAGGGGACTTGAGTCCAGAAAAATTGGGGAAGCATGTATTTGCCTTGTCACTCGCAGCTGATAAATATGGGATTGCTTATTTACAGAAGCAATGCGAGCAGTATATGCTGAATTCACTAAACATATCTAATGCGCTTGATGTGTTGGAGATTGCAGACACATGTTCCAACCAGAAGTTGAAGGACCCTGCTATGAAGTTCTCAGTTGACAACATTCAGGAGATAGTTTTGTCCTCAAGATATGAAGTATTTGCTCACAGAAGCCCTCATTTAACTGTGCAACTTTCCAGGGAATTATTGAAGATTCTCAATATCAAATGA 804 0.4117 MDCSVCTTMPLILRPPRNTICGACYEGARSILNVINKLESDKTMDNPTASPASPSHNSSKSLSAFKRWYTQQLDQMNEHKHQVAFLESFVDAFREQTHTDITVTPGNNGPPIPSHKAVLATRSEVFKNMLDSDECKAAPTDNITIPELNYEELESLLEFLYRGDLSPEKLGKHVFALSLAADKYGIAYLQKQCEQYMLNSLNISNALDVLEIADTCSNQKLKDPAMKFSVDNIQEIVLSSRYEVFAHRSPHLTVQLSRELLKILNIK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0972 267 Pfam BTB/POZ domain 93 200 IPR000210 GO:0005515
Lele27g0972 267 Gene3D - 202 265 - -
Lele27g0972 267 Gene3D Potassium Channel Kv1.1; Chain A 68 201 IPR011333 -
Lele27g0972 267 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 262 IPR044784 -
Lele27g0972 267 CDD BACK 202 239 - -
Lele27g0972 267 SUPERFAMILY POZ domain 76 200 IPR011333 -
Lele27g0972 267 ProSiteProfiles BTB domain profile. 99 169 IPR000210 GO:0005515
Lele27g0972 267 SMART BTB_4 99 201 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0972 Lele-ChrLele27 17508177 17509198 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele27g0972 BTB 2.2e-21 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0972 27 17508177 17509198 Lele25g1104 25 7149221 7149722 CCT
Lele27g0972 27 17508177 17509198 Lele27g0973 27 17511262 17511763 CCT
Lele27g0972 27 17508177 17509198 Lele28g1097 28 7127064 7127567 CCT
Lele27g0972 27 17508177 17509198 Lele27g0972 27 17508177 17509198 ECH
Lele25g1106 25 7152162 7152858 Lele27g0972 27 17508177 17509198 hybridization
Lele26g1104 26 7144459 7145464 Lele27g0972 27 17508177 17509198 hybridization