Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0971 ATGGTTTCTAATAAACAGCACAAAAGAGCAGCTCTGCATGAGAAGCTTCAACTCCTTCGTTCTATTACTAACTCTCATTCTCTAGACAAAACCTCGATCATATTGGACGCAACGAAGTACATCGAAGAGCTAAAGCAGAAGGTAGAAAGACTGAATCAAGACATAGCCCCTGCAGAAACTTCAAAAGACGACCCAAATCATCTGCCTATGGTATATTTTCTTGAATTCGTTACAGTGGAAACCCTAGAAAAGGGATTCCTGATAAATGTATATTCAGCCAAGAGTTGCCCAGGCCTGCTAGTTCCCATATTGGAGGTTTTCGAAGAGATGGGCCTCAGCGTCATTGAAGCTAGGGTTTCATGTTCAGACACTTTCCGGTTTCAAGCAGTAGGAGGAGAAGAGGAAGAAGAAGGGGATAGCATGGATGCAGAAGCAGTGACACAAGCAGTGGGAAGAGCCATAAAGAATTGGAGAGAGAGTACTACGAGTCAACACTCCAGGGTTCTTGAAACCCCCTTCTCCTCAATTTCTTTTGCGTTGCATCCTGCCTTCACCAATGGAGGACCCACCGTCGGTCTGAGCGCCGCCGATTCTAAGGTAGTTTGGGGTTTTGGGTGTTATGGATGGGAAATTGGGAGTGGATGCTGAGTCTGTACTAGGCAGGAAGATCAATATGTTTGGCGGAATATGGCTAATCATTCTTTAGTTTTTAATGACGCTCCTCTCGATTTAGTAGTTCATCCATTAGTCATCGGCCAGGAGTTTCCTGATGTGGAAACCTGCAGAAGAACAATGAAAGATGTTGCTATTGCTATGCATTTTGATCTTCGCATAGTTAAATCTGATCGCAGTCGTTTTATAGCAAAATGCTCTAAAGAAGGGTGCCCATGGCGTGTCCATGTAGCAAAATGTCCGGGTGGTCCAACTTTTACTGTGAGAACGCTACATGGAGAGCATACATGTGAGGGAGTTCACAACCTTCATCATCAGCAGGCATCAGTGGGTTGGGTTGCTAGATCTGTTGAGGCTCGAATTCGAGATAATCCACAATATAAACCAAGGGAAATCCTTCAAGATATTCGTGATCAGCATGGAGTTGCTGTTTCTTACATGCAAGCTTGGCGTGGGAAGGAGCGAAGCATGGCTGCCCTTCATGGAACATTTGAAGAAGGCTACCGACTTCTCCCTGCTTACTCTGCTGAGTTTGAGAGCAAGATTGCTGAGATGATAGAAATTTCACAGGATGTTATATCATGGTTTCAACATTTTCCTCCCCAACTTTGGGCTGTGGCATACTTTGAGGGTGTTCGATTTGGGCATTTCACGCTGGGAGTGACAGAATTGTTGTATAACTGGGCCCTTGAATGTCATGAGCTCCCTATAGTGCAGATGATGGAATACATCCGCCAGCAGATCGCATCTCGGTTTAATGAACAGCAAGATATGGGCATGAGTTGGACATCGATGCTTGTACCATCTGCTGAGAAGCGGATTTTGGAAGCACTTGCTGATGCTCACTGCTATCAAGTGCTCCGAGCCAATGAAGTTGAGTTTGAGATTGTGTCTACGGAGAGGACAAATATTGTGGATATAAGAAGTCGAGTGTGTTCTTGTCGCCGTTGGCAGCTGTATGGCTTACCTTGTGCACATGCTGCTGCTGCACTTATTTCATGTGGGCACAATGCTCATCTTTTTGCTGAACCTTGCTTCACAGTAAAAAGTTACCGAGTGACCTATTCACAGATAATAAATCCTATTCCAGACAAGAGTCAATGGAGAGAACTCGGGGAAGGAGCAGAAGATGGGGATGCCAAGGTGGACAACATCATACGTCCACCGAAAACACGTAGACCCCCTGGGAGGCCTAAAAAGAAGGTCCTTAGGGTGGAGAACTTTAAACGTCCCAAAAGAGTTGTTCAGTGTGGTCGTTGCCATATGTTAGGACATTCTCAAAAGAAATGCACAATGCCCCTTTGA 1977 0.4522 MVSNKQHKRAALHEKLQLLRSITNSHSLDKTSIILDATKYIEELKQKVERLNQDIAPAETSKDDPNHLPMVYFLEFVTVETLEKGFLINVYSAKSCPGLLVPILEVFEEMGLSVIEARVSCSDTFRFQAVGGEEEEEGDSMDAEAVTQAVGRAIKNWRESTTSQHSRVLETPFSSISFALHPAFTNGGPTVGLSAADSKVVWGFGCYGWEIGSGCXVCTRQEDQYVWRNMANHSLVFNDAPLDLVVHPLVIGQEFPDVETCRRTMKDVAIAMHFDLRIVKSDRSRFIAKCSKEGCPWRVHVAKCPGGPTFTVRTLHGEHTCEGVHNLHHQQASVGWVARSVEARIRDNPQYKPREILQDIRDQHGVAVSYMQAWRGKERSMAALHGTFEEGYRLLPAYSAEFESKIAEMIEISQDVISWFQHFPPQLWAVAYFEGVRFGHFTLGVTELLYNWALECHELPIVQMMEYIRQQIASRFNEQQDMGMSWTSMLVPSAEKRILEALADAHCYQVLRANEVEFEIVSTERTNIVDIRSRVCSCRRWQLYGLPCAHAAAALISCGHNAHLFAEPCFTVKSYRVTYSQIINPIPDKSQWRELGEGAEDGDAKVDNIIRPPKTRRPPGRPKKKVLRVENFKRPKRVVQCGRCHMLGHSQKKCTMPL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0971 658 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 163 - -
Lele27g0971 658 MobiDBLite consensus disorder prediction 603 623 - -
Lele27g0971 658 Pfam MuDR family transposase 249 312 IPR004332 -
Lele27g0971 658 SMART 26again6 534 561 IPR006564 GO:0008270
Lele27g0971 658 Pfam SWIM zinc finger 525 558 IPR007527 GO:0008270
Lele27g0971 658 Coils Coil 34 61 - -
Lele27g0971 658 ProSiteProfiles Zinc finger SWIM-type profile. 518 559 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0971 Lele-ChrLele27 17498787 17507618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0971 12 152 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.065 1.27e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1108 26 7166030 7169032 Lele27g0971 27 17498787 17507618 CCT
Lele27g0970 27 17487579 17488264 Lele27g0971 27 17498787 17507618 CCT
Lele28g1101 28 7146717 7149687 Lele27g0971 27 17498787 17507618 CCT
Lele25g1107 25 7153415 7160410 Lele27g0971 27 17498787 17507618 CCT
Lele27g0971 27 17498787 17507618 Lele28g1100 28 7133272 7138483 ECH
Lele41g0225 41 1839189 1840569 Lele27g0971 27 17498787 17507618 ECH
Lele42g0219 42 1839556 1841011 Lele27g0971 27 17498787 17507618 ECH
Lele43g1139 43 19745146 19746519 Lele27g0971 27 17498787 17507618 ECH
Lele44g1127 44 19894749 19896676 Lele27g0971 27 17498787 17507618 ECH
Lele01g1015 01 5882328 5883424 Lele27g0971 27 17498787 17507618 ECH
Lele02g1030 02 6343401 6344516 Lele27g0971 27 17498787 17507618 ECH
Lele03g1016 03 5890967 5892075 Lele27g0971 27 17498787 17507618 ECH
Lele04g1019 04 6316093 6317161 Lele27g0971 27 17498787 17507618 ECH
Lele27g0971 27 17498787 17507618 Lele27g0971 27 17498787 17507618 ECH
Lele25g1107 25 7153415 7160410 Lele27g0971 27 17498787 17507618 hybridization
Lele26g1107 26 7155072 7156282 Lele27g0971 27 17498787 17507618 hybridization