Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0968 ATGAACTACAGGACAAGACGATTCTCCGCGCTCCTTCTCTCAGTTCATAAATTCGCCGCCGGTATGTCGCCGGCCAACGGAGTGCACGTCCCTCTCTTGCCGGAAAGCAAAGTTTTAGTGAAGCCAGCCTCCGTCTATGGTGCTGTCTTCAATGTGGCTACGAGTATAATTGGCGCCGGAATCATGTCGATTCCGGCGACCCTGAAGGTTCTGGGCGTAATCCCGGCCTTCGGGATGATCCTTGTCATCGGTCTCCTTGCCGAAGTTTCAGTGGACTTCCTCATGAGGTTTACGCATTCCGGCGCTACCACCACTTATGCTGGCGTGATGAGAGAAGCTTTCGGGCCGGCCGGAGCACTTGCCGCCCAAATTGGTGTGATGATCACAAATCTTGGGTGTTTAATTATGTACCTCATTATCATCGGGGATGTTTTGTCTGGAAATTCACCTGGAGGCGAGGTTCACTTGGGGATTCTGCAACAATGGTTAGGAATTCACTGGTGGACTTCACGGGAATTTGCTCTGCTCGTGATAATCATCGCCATGCTTCCACTGGTCCTGTATCGCCGTGTGGAGTCGTTAAGGTTCAGTTCTGCAATATCAACTCTTCTAGCAGTGGCATTCGTGGGCATATGTTCTGGCATGGCAATCACAGCTCTGATCGCCGGAAAAACACATCCTCCGAGATTGCTCCCTGAGTTCAACCACCACACCTCCTTTTTTGATCTTTTCACAGCCGTTCCAGTCATAGTCACTGCCTTCACCTTTCACTTCAATGTGCATCCAATTGGGTTTGAACTTGAGAAGCCATCTGATATGGCAGTAGCAGTTCGAATAGCTTTAGTTCTATGCGGTGCCATATACTTTGCGATTGGCCTATTTGGGTATCTTCTGTTTGGGGATTCAACACAATCGGATATACTCATAAACTTTGATCAGAACACTGCTGGTTCTGCAACTGGTTCGTTGCTCAACACTCTGGTTCGTTTAAGCTATGCTTTTCACGTGATGTTGGTGTTTCCTCTCTTGAACTTCTCTCTGAGAGCCAACATAGACGAGCTTCTCTTCCCCAAGAAGCCTCTCCTTGCAACAGACAAGAAAAGATTTGTGATCCTCACTCTGGTGCTCCTCGTCTCCAGCTACCTCATCGCCATAGCTCTCCCTGATATCTGGTACTTCTTTCAGTTCGTGGGATCAACCTCTGCAATGTGCCTCGCCTTCATCTTTCCTGGTTCTCTTGCTCTCAGGGATGCTCAAGGAATATCGAAAATAAGAGACAAGATCAAAGCACTAATAATGATCATCCTGGCTGTAGTAACAAGCGCGATTGCCATTTCTATCAACATATACAACTTCTTCGGTAACAAGTCATAG 1374 0.4796 MNYRTRRFSALLLSVHKFAAGMSPANGVHVPLLPESKVLVKPASVYGAVFNVATSIIGAGIMSIPATLKVLGVIPAFGMILVIGLLAEVSVDFLMRFTHSGATTTYAGVMREAFGPAGALAAQIGVMITNLGCLIMYLIIIGDVLSGNSPGGEVHLGILQQWLGIHWWTSREFALLVIIIAMLPLVLYRRVESLRFSSAISTLLAVAFVGICSGMAITALIAGKTHPPRLLPEFNHHTSFFDLFTAVPVIVTAFTFHFNVHPIGFELEKPSDMAVAVRIALVLCGAIYFAIGLFGYLLFGDSTQSDILINFDQNTAGSATGSLLNTLVRLSYAFHVMLVFPLLNFSLRANIDELLFPKKPLLATDKKRFVILTLVLLVSSYLIAIALPDIWYFFQFVGSTSAMCLAFIFPGSLALRDAQGISKIRDKIKALIMIILAVVTSAIAISINIYNFFGNKS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0968 457 Pfam Transmembrane amino acid transporter protein 42 446 IPR013057 -
Lele27g0968 457 PANTHER AMINO ACID TRANSPORTER 41 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0968 Lele-ChrLele27 17482498 17484372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0968 22 455 Amino Acid or Auxin Permease AAAP Family AT3G56200 58.945 9.64e-175 495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1111 26 7177548 7181745 Lele27g0968 27 17482498 17484372 CCT
Lele27g0967 27 17474937 17479237 Lele27g0968 27 17482498 17484372 CCT
Lele28g1104 28 7157705 7161928 Lele27g0968 27 17482498 17484372 CCT
Lele25g1110 25 7174472 7177626 Lele27g0968 27 17482498 17484372 CCT
Lele27g0968 27 17482498 17484372 Lele27g0968 27 17482498 17484372 ECH
Lele25g1110 25 7174472 7177626 Lele27g0968 27 17482498 17484372 hybridization
Lele26g1110 26 7171291 7173673 Lele27g0968 27 17482498 17484372 hybridization