Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0949 ATGGACTCTGACTTTCCCAACAAAGCCTTAACGAGAACGCGATTTTGTGAGCTGGACCCACCACTTTCTGAACCGGTTCTCGAAGCCCTATCAGAGTCTGGCTTCGAGTTCTGCACGCCGGTCCAAGCCGCTACAATACCTTTGCTATGCAGTTTTAAGGACGTGGCCGTCGACGCTGCCACCGGTTCAGGCAAGACGCTGGCATTTGTCGTTCCCCTTGTTGAGATTCTCCGCCGGTCCTGTCCCAATCCCAAACTTCATCAGGTATTTGGAATAATTATATCTCCCACAAGGGAGCTGTCATCCCAAATATACCATGTTGCACAACCTTTCATTGAAACTTTAGCTAATGTTAAGTCCATGCTCCTTGTTGGTGGAGTAGACGTAAAAGCAGATATGAAGAAAATTGAGGAAGAAGGAGCTAATATATTGATTGGCACACCCGGGCGGCTATATGACATAATGAATCGAATGGATATATTGGATTTTAAAAGCTTGGAGATTTTAATTTTAGACGAGGCTGATAGACTCTTGGATATGGGATTCCAGAAGCAGATTAATTCCATTATATATCTCTTACCAAAGCTTCGCAGAACAGGTCTATTCTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAAGCGGGGCTGAGGAACCCTGTGAGGGTTGAAGTCCGTGCAGAGTCAAAATCAGTAAATGACCCTGCAGCATCACAACAACCAACCTCTTCAAAGACACCTGCAGGACTTCAAATTGAGTACATGGAATGCGAGGCTGAAAAGAAACCATCTCAGCTTGTTGATATCTTAATGAAGAACCGCTCCAAAAAAATGATAATATACTTCATGACCTGTGCCTGTGTTGACTATTGGGGACTTGTCCTTCCTCGCCTTTCTACTTTGAAAGGTTTTTCCTTGATCCCTCTTCATGGAAAGATGAAGCAGGCTGCTAGGGAGAAGGCATTGGCGTCATTTACATCTCTTTCAACTGGAATACTTCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCTGGAGTTGATTGTATAGTGCAGTATGATCCCCCACAAGATCCAAATGTTTTCATACATAGAGTTGGGCGAACTGCTCGGCTGGGTAAACAAGGACATGCTATTGTCTTCTTATTGCCAAAGGAAGAATCTTATGTGGAATTCCTGCGCGTAAGAAGAGTCCCCCTCCAAGAGAGAAGTTGCTCTAATGATGCATCTGATGTTGTTCCTGAGATTCGTTCTGCTGCCAAAAAAGATCGTGATGTAATGGAAAAAGGACTTAGGGCATTTGTTTCTTATATTCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCCGTGGGATATGGCTTACTGCAGCTTCCTTCAATGTCAGAGTTAAAACAGCAGTCATTGTCCACGGAAGGTTTTGTACCAGTTGAAGACATTAATTTGGAGGACATCAAGTACAGGGATAAATCTCGTGAAAAGCAAAGGAAGCAAAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGACGAAGCCTCAGAAACCCAACAAAACCCCAAAAACTGCCCCTGTAACAAGGAAGAAAACAGCTAAACAAAGACGTGCTCAGCAGTCAGTTGAAGATGAGGATGAGCTTATGTGA 1683 0.4355 MDSDFPNKALTRTRFCELDPPLSEPVLEALSESGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCPNPKLHQVFGIIISPTRELSSQIYHVAQPFIETLANVKSMLLVGGVDVKADMKKIEEEGANILIGTPGRLYDIMNRMDILDFKSLEILILDEADRLLDMGFQKQINSIIYLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSVNDPAASQQPTSSKTPAGLQIEYMECEAEKKPSQLVDILMKNRSKKMIIYFMTCACVDYWGLVLPRLSTLKGFSLIPLHGKMKQAAREKALASFTSLSTGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLRVRRVPLQERSCSNDASDVVPEIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLAVGYGLLQLPSMSELKQQSLSTEGFVPVEDINLEDIKYRDKSREKQRKQNLQAKKEAKEKETKPQKPNKTPKTAPVTRKKTAKQRRAQQSVEDEDELM 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0949 560 SMART helicmild6 290 375 IPR001650 -
Lele27g0949 560 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Lele27g0949 560 SMART ultradead3 34 234 IPR014001 -
Lele27g0949 560 MobiDBLite consensus disorder prediction 233 247 - -
Lele27g0949 560 FunFam RNA helicase 9 227 - -
Lele27g0949 560 Coils Coil 503 525 - -
Lele27g0949 560 PANTHER RNA HELICASE 14 516 - -
Lele27g0949 560 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Lele27g0949 560 MobiDBLite consensus disorder prediction 501 529 - -
Lele27g0949 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Lele27g0949 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 395 IPR027417 -
Lele27g0949 560 MobiDBLite consensus disorder prediction 228 247 - -
Lele27g0949 560 CDD SF2_C_DEAD 251 384 - -
Lele27g0949 560 CDD DEADc_DDX55 26 224 - -
Lele27g0949 560 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Lele27g0949 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Lele27g0949 560 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Lele27g0949 560 Gene3D - 252 489 IPR027417 -
Lele27g0949 560 Gene3D - 4 227 IPR027417 -
Lele27g0949 560 MobiDBLite consensus disorder prediction 501 560 - -
Lele27g0949 560 SMART DUF4217_3 413 476 IPR025313 -
Lele27g0949 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0949 Lele-ChrLele27 17372644 17376284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0949 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 29.947 4.62e-47 168