Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0947 ATGGCTTTGTTTCAGATGCCTGAAACAAACGACGACGTAGCGGTGTACCTATTACTTCGGCCTTCTGCCTTCGTCTTCCAGCTTAACCCTTTACCTAGATTGCGTTTGGCCACACAGAGAGAGCTACCCAGTATCACCACTACCAAACCGCCTCTTGCTCCCTCCACAATCCCATCAAAAGCCTCAGAAACCCAAACCATGGCTCCCAACCTTGAATGTCGGATGTACGAGTCCAAGTATCCGGAAGTGGACATGGCCGTTATGATACAGGTCAAGAACATCGCCGACATGGGCGCATACGTCTCACTTCTTGAGTACAACAACATCGAAGGCATGATCTTGTTCTCCGAGCTCTCTCGCCGCCGGATTCGCAGCGTCAGCAGTCTCATCAAGGTCGGCCGCATCGAGCCCGTCATGGTTCTCAGGGTCGACAAGGAAAAGGGTTACATCGATTTGAGCAAGAGAAGGGTGTCTGAGGAGGATATCCAGGCTTGCGAGGAGAGGTACAACAAGAGCAAGCTTGTTCACTCCATCATGCGTCACGTCGCTGAGACTGAAAATATCGATTTAGAGGAGCTGTATGTTCACATCGGATGGCCTCTATATCGTAAATATGGTCATGCTTTTGAGGCATTCAAAATAATTGTTACGGATCCTGATTCAGTTTTGAATTCCCTCACCCGTGAGGTCAAGGAGGTTGGCCCTGATGGGCAGGAGGTGACCAAGGTGGTTCCAGCAGTATCAGAAGAGGTGAAGGAAGCTCTGGTAAAGAACATCAGAAGAAGAATGACCCCCCAGCCCTTGAAAATTAGGGCAGATATTGAAATGAAGTGCTTTCAGTTTGATGGAGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAAGCTGCTGGAAATAATGATTGCCCAGTGAGGATTAAACTTGTTGCTCCTCCACTTTATGTTCTTACCACTCAGACTCTTGACAAGGAGCAAGGAATATTGGTACTCAAAGATGCTATTGAGGCTTGCACTAAAGCCATAGAGCAACACAAAGGCAAACTAGTTGTGAAGGAGCAACCCAGAGCAGTGAGTGAACGTGATGATAAATTGCTTGCTGAACACATGGCTAAGCTACGCCAAGATAACGAGGAGATCAGTGGTGATGAAGATAGTGAAGAGGAAGAAGATACAGGAATGGGAGAAGTTGATGTGGACCAGGGTGTTGGCATAACAGAGTGA 1221 0.4767 MALFQMPETNDDVAVYLLLRPSAFVFQLNPLPRLRLATQRELPSITTTKPPLAPSTIPSKASETQTMAPNLECRMYESKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETENIDLEELYVHIGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEVGPDGQEVTKVVPAVSEEVKEALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNNDCPVRIKLVAPPLYVLTTQTLDKEQGILVLKDAIEACTKAIEQHKGKLVVKEQPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVDQGVGITE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0947 406 ProSiteProfiles S1 domain profile. 84 155 IPR003029 GO:0003676
Lele27g0947 406 Coils Coil 369 389 - -
Lele27g0947 406 Pfam S1 RNA binding domain 81 155 IPR003029 GO:0003676
Lele27g0947 406 SUPERFAMILY eIF2alpha middle domain-like 157 262 IPR024054 -
Lele27g0947 406 Gene3D EIF_2_alpha 268 390 IPR024055 -
Lele27g0947 406 SUPERFAMILY Nucleic acid-binding proteins 74 155 IPR012340 -
Lele27g0947 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 67 396 IPR011488 GO:0003723|GO:0003743
Lele27g0947 406 Gene3D Translation initiation factor 2; subunit 1; domain 2 158 261 IPR024054 -
Lele27g0947 406 MobiDBLite consensus disorder prediction 379 395 - -
Lele27g0947 406 CDD S1_IF2_alpha 81 156 IPR044126 GO:0003723
Lele27g0947 406 FunFam Eukaryotic translation initiation factor 2 subunit alpha 70 157 - -
Lele27g0947 406 FunFam Eukaryotic translation initiation factor 2 subunit 1 268 390 - -
Lele27g0947 406 Gene3D - 69 157 IPR012340 -
Lele27g0947 406 SMART S1_6 82 155 IPR022967 -
Lele27g0947 406 MobiDBLite consensus disorder prediction 371 406 - -
Lele27g0947 406 Pfam Eukaryotic translation initiation factor 2 alpha subunit 193 323 IPR011488 GO:0003723|GO:0003743
Lele27g0947 406 SUPERFAMILY eIF-2-alpha, C-terminal domain 266 382 IPR024055 -
Lele27g0947 406 FunFam Eukaryotic translation initiation factor 2 subunit alpha 158 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0947 Lele-ChrLele27 17358848 17363025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0947 68 406 Eukaryotic Initiation Factors Gene Family AT5G05470 82.059 0.0 538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0947 27 17358848 17363025 Lele28g1124 28 7282549 7286446 ECH
Lele27g0947 27 17358848 17363025 Lele27g0947 27 17358848 17363025 ECH
Lele25g1132 25 7296743 7300274 Lele27g0947 27 17358848 17363025 hybridization
Lele26g1132 26 7289785 7296481 Lele27g0947 27 17358848 17363025 hybridization