Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0945 ATGGAGAGGCTGGCGGAGGTAACCGAATCGGAGATACGAATTGACTTTGCTCTCAACTGCAAATGCCGAGCCACCGTCACTCTCCGATCTCTTTGCGCCGCCTCGCCGCTGGCCTTCAAGGTCCAGACCTCCTCCCCCAACAAGTTCCTCGTTAACCCTCCCTCCGGCATCATCCCTTCTCTCTCTCACGCCACCTTCCAAGTCATCCTCAAGCCTCAGTCCCAGCTTCCCCCGACCTTTCCTCGCTCGCCGTCCGATCGCTTCCTCGTCAAAATCGCCCAATTCCTCCCCGACGCCTCCAAGTCCGTTCCCTCTCACACTATTAACTCATGGTTCTCCTCTCTCCCATCCCCCGCTTCCACTCAGAATCTCAAACTCAAGGTCGCCTTCGTCGGCCCCTTCCTTCTCCGCCATGCCGTCGCGAGTGGTGATTTGGATGCTGTTAGGAACACCATCAAACGGCAGAGGCCCTTACTCGCCGATTTGTCACCCAATGAAGCTGAGTCGCTCCTCCGGCTGGCCACCGAGTTGGTTAACCCGGACGACATGGTTCACTTGCTACTGGAAGCTGGGTTGAGAGTGGCCGAGGAATTGGGATCGGGTAACGGGGACCCGAGGTGGGCTTCGAAGGGCTGGGATGAGCTACACGTGGCCGCTGCTTTTGATCGGACGGATGACGTCATCAGGTTGTTAAAGACGAATCCGTCGTGGCAGTTGGATTCCAGAGATCACAAGGGCAGGACACCTTTGCATTTGGCGGCGGATAAGGGAAATATCAGGTGCGCTTGCTTGCTGGTGGAAGGAGGTGCGAATGTGAATGCCAGTTGTAACGACGGTCGCACGCCGTTGTGCAGAGCAGCGGCGAATGGTGACCGTAGGATGGTGGAAATGCTGGTTGAGATGGGCGCTGACCCAACTATAACCGACGATCGGGGCCGTTCAGCCCTTTCCATTGCCAGCGATGAAGGACATAAAGAGATGGTGGAAATAATGGAGCAAGGAGAAGAAGTACTAGCGGCAGCGAGGCATGGGGACGTGAAGAAGCTGGAGACCCTGTTGAAGAGAGGAGCGAGTGTACAGTATCGAGATCAGTATGGTTTGACTGCACTTCATGCGGCAGCCATGAAAGGGCACAGAGAGATGGTATCCATGCTGACGGAAGCGGGGTTGGATTTGGAATGTGAGGACGAGGAAGGCCACGCGCCGCTGCATATGGCGGTGGAGAGTGGTGACCAAGAGACCATACAAGTTTTAGTGAACAAGGGCGTGAATGTAAATTCCGCCAATAAGAAGGGTGCCACCCCTCTGTACATGGCTAAAATTTTGGGATACGATGCCATAGCTGACTTTCTTGTCAGCAAGGGAGCAATGTCCTGTTTTCCTGTAATTTTACAGTAA 1398 0.5486 MERLAEVTESEIRIDFALNCKCRATVTLRSLCAASPLAFKVQTSSPNKFLVNPPSGIIPSLSHATFQVILKPQSQLPPTFPRSPSDRFLVKIAQFLPDASKSVPSHTINSWFSSLPSPASTQNLKLKVAFVGPFLLRHAVASGDLDAVRNTIKRQRPLLADLSPNEAESLLRLATELVNPDDMVHLLLEAGLRVAEELGSGNGDPRWASKGWDELHVAAAFDRTDDVIRLLKTNPSWQLDSRDHKGRTPLHLAADKGNIRCACLLVEGGANVNASCNDGRTPLCRAAANGDRRMVEMLVEMGADPTITDDRGRSALSIASDEGHKEMVEIMEQGEEVLAAARHGDVKKLETLLKRGASVQYRDQYGLTALHAAAMKGHREMVSMLTEAGLDLECEDEEGHAPLHMAVESGDQETIQVLVNKGVNVNSANKKGATPLYMAKILGYDAIADFLVSKGAMSCFPVILQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0945 465 Gene3D - 336 459 IPR036770 -
Lele27g0945 465 ProSiteProfiles Ankyrin repeat region circular profile. 278 310 - -
Lele27g0945 465 ProSiteProfiles Ankyrin repeat profile. 278 310 IPR002110 GO:0005515
Lele27g0945 465 SUPERFAMILY PapD-like 10 140 IPR008962 -
Lele27g0945 465 ProSiteProfiles Ankyrin repeat region circular profile. 245 274 - -
Lele27g0945 465 SMART ANK_2a 431 461 IPR002110 GO:0005515
Lele27g0945 465 SMART ANK_2a 398 427 IPR002110 GO:0005515
Lele27g0945 465 SMART ANK_2a 365 394 IPR002110 GO:0005515
Lele27g0945 465 SMART ANK_2a 311 340 IPR002110 GO:0005515
Lele27g0945 465 SMART ANK_2a 245 274 IPR002110 GO:0005515
Lele27g0945 465 SMART ANK_2a 278 307 IPR002110 GO:0005515
Lele27g0945 465 SMART ANK_2a 210 240 IPR002110 GO:0005515
Lele27g0945 465 Gene3D Immunoglobulins 2 133 IPR013783 -
Lele27g0945 465 Pfam MSP (Major sperm protein) domain 35 100 IPR000535 -
Lele27g0945 465 ProSiteProfiles Major sperm protein (MSP) domain profile. 3 129 IPR000535 -
Lele27g0945 465 PANTHER ANKYRIN REPEAT CONTAINING 138 332 - -
Lele27g0945 465 ProSiteProfiles Ankyrin repeat profile. 245 277 IPR002110 GO:0005515
Lele27g0945 465 ProSiteProfiles Ankyrin repeat profile. 365 397 IPR002110 GO:0005515
Lele27g0945 465 ProSiteProfiles Ankyrin repeat profile. 398 430 IPR002110 GO:0005515
Lele27g0945 465 ProSiteProfiles Ankyrin repeat region circular profile. 365 397 - -
Lele27g0945 465 SUPERFAMILY Ankyrin repeat 188 456 IPR036770 -
Lele27g0945 465 Pfam Ankyrin repeats (many copies) 265 319 IPR002110 GO:0005515
Lele27g0945 465 PRINTS Ankyrin repeat signature 294 308 IPR002110 GO:0005515
Lele27g0945 465 PRINTS Ankyrin repeat signature 246 261 IPR002110 GO:0005515
Lele27g0945 465 ProSiteProfiles Ankyrin repeat region circular profile. 398 430 - -
Lele27g0945 465 Pfam Ankyrin repeats (3 copies) 340 428 IPR002110 GO:0005515
Lele27g0945 465 Gene3D - 134 335 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0945 Lele-ChrLele27 17354056 17355802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0945 240 462 Miscellaneous Gene Families AT2G31820 30.242 7.08e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0945 27 17354056 17355802 Lele25g1147 25 7390741 7402155 CCT
Lele27g0945 27 17354056 17355802 Lele26g1147 26 7372915 7384377 CCT
Lele27g0945 27 17354056 17355802 Lele27g0933 27 17266674 17278140 CCT
Lele27g0945 27 17354056 17355802 Lele28g1139 28 7370446 7381881 CCT
Lele25g1134 25 7303666 7305413 Lele27g0945 27 17354056 17355802 hybridization
Lele26g1134 26 7300082 7301426 Lele27g0945 27 17354056 17355802 hybridization