Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0937 ATGACAAGCCGGCAAGATGCTCAGGTGTTCAATTGGCACTATACAGAGCTGGATAACCATAACCTTGAAGTTCGAAGCAGAAAAGTCTTGTTCATCATCTTTCTTTTCTGTTTGATTCTTCTAATGATTCTTCTCTTCCTCTGCGCTCGATGGATCTGCCGGTACCGTGACCACCTTCCGACTACTTTCCACTCTAGTCAGGTGCGTCACGCGGCGTCTCCGCCGTCGCAAGGTCTCGACCTTGATTCGATCAAGAAATTGCCGATAATCTTGCACCAGGCGCCGTCGGACTCAGATTGCTCATTGGAGGAAACAGAGTGCTGTATTTGCCTCAGCGTGTTCGAAGATGGCGAGAAATTGAAGGTGTTGCCTGGATGCAAGCATTGTTTCCACTGTCAGTGTGTCGATAACTGGCTTATTAATCACTCCAGTTGCCCACTTTGTAGAGCTTCTATCAAAGTTGAAGTTGATTCTTCGTTTCCAGAGATTTTGATTCAGGAACCGCCAATTAGAATCGACCTTCAATTCTAG 531 0.4652 MTSRQDAQVFNWHYTELDNHNLEVRSRKVLFIIFLFCLILLMILLFLCARWICRYRDHLPTTFHSSQVRHAASPPSQGLDLDSIKKLPIILHQAPSDSDCSLEETECCICLSVFEDGEKLKVLPGCKHCFHCQCVDNWLINHSSCPLCRASIKVEVDSSFPEILIQEPPIRIDLQF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0937 176 SMART ring_2 107 148 IPR001841 -
Lele27g0937 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 159 - -
Lele27g0937 176 Pfam Ring finger domain 106 149 IPR001841 -
Lele27g0937 176 SUPERFAMILY RING/U-box 101 155 - -
Lele27g0937 176 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lele27g0937 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0937 Lele-ChrLele27 17294258 17294788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0937 3 158 C3H Transcription Factor Family AT3G11110 39.103 1.30e-31 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1142 25 7369286 7369816 Lele27g0937 27 17294258 17294788 CCT
Lele25g1133 25 7300965 7302788 Lele27g0937 27 17294258 17294788 CCT
Lele25g1142 25 7369286 7369816 Lele27g0937 27 17294258 17294788 hybridization