LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g0936	ATGGCTGGAGTGAAAGGCTCTTGGAGTCCCCAAGAAGACGCCACCCTCATCAAACTCGTCCAGCAGCACGGCCCTCGCAATTGGTCTCTCATCAGCATCGGCATACCGGGCCGCTCCGGCAAGTCTTGCAGGCTCCGATGGTGCAATCAGCTTAGCCCCGGCTTACAACACCGCCCTTTCACTCCCGCCGAAGACGCCCTCATCGTCCAGGCTCACGCCATCCACGGAAACAAGTGGGCTACCATTGCCCGTCTCTTGCCCGGAAGAACTGACAACTCCATTAAGAACCACTGGAACTCCACACTGCGCCGCCGCCGAGCGGTGGAGAGGTCGTGTGCGTCCGGATCGTCAGAGTCGAACTCTGTTATGGTAACGAAGAATCGTCCGGAGCATTCTAATCCCCCGAATGCATCGGACGCGTGGGAGTCGGGGAGACGATTGAAGCGGCGGTGCCTGGGGAGGATTGCGCCGGAAAACAATAGATACAAGTGTCCAATGGTGGGCCCAGTGGCGACGTCGTTGAGTTTGTTACCTCCAGGAGAGAGAGTGAATCACAAAGTTAAAGAAGAGAAGGAGGAACGCGAAGATGAAGGGAAAGGCAAGGGCGAGGGCGGAGGTGAAGGGACTGAGAACGGGAAGCGAACGGAGGAAGAAGAAGAGCCGGGCCTGATGAGGATGATGAAGCGGTTGATAGCAGAGGAGGTTAGGCATTACATTGATAGTTTGGGTGCCGATGATAAGCTCGTTCTCAGAACTGGACTGGGCCTTCACATGGACCCATCATCTTTTCATGAGTAA	798	0.5602	MAGVKGSWSPQEDATLIKLVQQHGPRNWSLISIGIPGRSGKSCRLRWCNQLSPGLQHRPFTPAEDALIVQAHAIHGNKWATIARLLPGRTDNSIKNHWNSTLRRRRAVERSCASGSSESNSVMVTKNRPEHSNPPNASDAWESGRRLKRRCLGRIAPENNRYKCPMVGPVATSLSLLPPGERVNHKVKEEKEEREDEGKGKGEGGGEGTENGKRTEEEEEPGLMRMMKRLIAEEVRHYIDSLGADDKLVLRTGLGLHMDPSSFHE	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g0936	265	ProSiteProfiles	Myb-like domain profile.	5	51	IPR001005	-
	Lele27g0936	265	MobiDBLite	consensus disorder prediction	172	222	-	-
	Lele27g0936	265	CDD	SANT	7	49	IPR001005	-
	Lele27g0936	265	FunFam	MYB transcription factor	5	56	-	-
	Lele27g0936	265	MobiDBLite	consensus disorder prediction	182	222	-	-
	Lele27g0936	265	CDD	SANT	59	102	IPR001005	-
	Lele27g0936	265	SMART	sant	4	53	IPR001005	-
	Lele27g0936	265	SMART	sant	56	104	IPR001005	-
	Lele27g0936	265	MobiDBLite	consensus disorder prediction	112	139	-	-
	Lele27g0936	265	Gene3D	-	4	56	-	-
	Lele27g0936	265	PANTHER	MYB PROTEIN-RELATED	5	131	-	-
	Lele27g0936	265	MobiDBLite	consensus disorder prediction	110	143	-	-
	Lele27g0936	265	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	56	106	IPR017930	-
	Lele27g0936	265	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	55	IPR017930	-
	Lele27g0936	265	Pfam	Myb-like DNA-binding domain	59	101	IPR001005	-
	Lele27g0936	265	Pfam	Myb-like DNA-binding domain	5	51	IPR001005	-
	Lele27g0936	265	Gene3D	-	59	105	-	-
	Lele27g0936	265	ProSiteProfiles	Myb-like domain profile.	52	102	IPR001005	-
	Lele27g0936	265	SUPERFAMILY	Homeodomain-like	4	98	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g0936	Lele-ChrLele27	17290191	17290988	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g0936	1	115	MYB Transcription Factor Family	AT4G37260	68.966	9.33e-52	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele27g0936		Myb_DNA-binding	6.6e-16	CL0123