Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0929 ATGTGTTCCTCTTGCAATAAGCAATACGTTGTTTATTCAGTGCCAAAACTTGCTTTTTCTACTCAAACTAAACAAGAGCAAAACGAGAGGACTCTTAGTAGAGAGGACTTTAATATGTGCAGTATCTCAAAAACTAAGCTTTCTCCCTCTAATAACGACATGGATAGCGAGTTTCGGAAGCAGAATTGTGATGTTCTATGTAACATCTCAAGTCTGCTCGAGCTGTCTGCGACCGATGATCTCGAAACTTTCTTAAGGGAAGTACAAGAGAAGGGTTCTGATGTGAACGAGGAAAGCTTTTGGTATGGAAGAATTATTGGATCAAAGAAGATGGGATTGGAAAAGAGGACGCCTCTCATGGTTGCTTCTTTGTTTGGAAGCACCGAGGTGCTGAAGTATATTATTGAAACAGGAAGAGCTGATGTGAACAGGGCCTGTGGTTCCGATAAGGCCACGGCTCTCCATTGCGCTGTTGCCGGTGGCTCTGAAGCCTCACTTCAGATTGTTAAGCTCTTGCTTGATGCGAAGGCAGATCCTGATTGCCTTGATGCTTGTGGAAATAAGCCTGTTAATTTGGTTGCTCCTGCCTTTAGTTATTCATCCAACTTGCGAAGGAAGGCGATGGAGTCGTTGCTTAGAGGTGATGAATTAGGTGGGGGAAGTGATCAAATTATCGAACAGGAGGCCGAGCAACAGAAAACTACAGTGCCTTCTTTATCATCAAAAGAAGCAGCGGAGAAGAAAGAATATCCTGTTGATATATCTTTGCCTGACATAAACAATGGTGTATATGGAACGGATGAGTTCAGGATGTACAGTTTCAAGGTGAAGCCGTGTTCAAGGGCATACTCTCATGACTGGACCGAGTGTCCATTTGTTCATCCCGGGGAGAATGCAAGGAGGAGGGATCCACGGAAGTATCCTTACAGCTGCGTTCCTTGCCCGGAGTTCCGCAAGGGAAGCTGCCCCAAGGGGGATGCCTGTGAGTACGCTCACGGTGTTTTTGAGTCATGGCTCCATCCTGCTCAATACCGAACAAGGCTCTGCAAGGATGAGACTGGTTGCTCACGGAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTGCGCCCTGTGTATGCTTCCACCGGTTCAGCAATGCCTTCGCCAAAATCCTTTTCAGCTAGTGCGCTTGACACGACAGTTATGAGTCCATTAGCTCTTAGCTCTTCGTCTCTGCCAATGTCAACTGTTTCAACACCACCCTTGTCTCCTTTGGCTGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCCACCATCCTTGCAGCTGCCGGGTAGCCGGCTGAAGGCGGCCTTAAGTGCTAGGGATCTTGATTTGGAGATGGAACTGCTTGGGCTAGAAAGTCCAGCTAAACACCAGCAGCAGCAGCAGTTGATAGAAGAGATAGCTCGAATATCTTCGCCGTCTTTCCGGAACAAAGAATATAGTAGGATAGGTGATTTGAAGCCAACTAACCTTGATGACCTTTTGGGATCTGTTGATCCTTCTGTTCTTTCTCAACTTCACGGACTTTCAGCACAACCTTCAATGCCTACTCAGCTGCAATCTCCCAATGGGCTTCAGATGCACCAAAACATGAACCACCTTCGCACGAGCTATCCCACCAACCTTCCTTCCTCGCCGGCAAGAAATTCATTGGGCCTAGGGTTTGATTCATCGTCTGCTGTGGCAGCAGCAGTGATGAACTCCAGATCTGCAGCGTTTGCAAAGCGAAGTCAAAGTTTTATTGATCGTGGGACGATGTCGCCTCACCATTTTGGGCAATCTGCACCTTCCAACACCGCCTGTAGGGTTTCTTCTGCACTTTCAGATTGGAGATCCCCTGATGGGAAATTGGATTGGGGTATGAATGGAGATGAGCTGAATAAACTGAAGAAATCTGTTTCTTTCGGGTTCAGAAACAATGGAAACACTAAGACCAACATGGCACGGTCTGAAAATTTTGAGCCAGACGTGTCGTGGGTTAATTCGTTGGTTAAAGACGTTCCCTCTGAGAAGAAGCAGCAGCAATTTGATCCAAGTAGAGAGATGCTTTCACCATGGGTGGAGCAGCTGTATAGAGAACACGAGCAGATAGTTGCATAA 2145 0.4671 MCSSCNKQYVVYSVPKLAFSTQTKQEQNERTLSREDFNMCSISKTKLSPSNNDMDSEFRKQNCDVLCNISSLLELSATDDLETFLREVQEKGSDVNEESFWYGRIIGSKKMGLEKRTPLMVASLFGSTEVLKYIIETGRADVNRACGSDKATALHCAVAGGSEASLQIVKLLLDAKADPDCLDACGNKPVNLVAPAFSYSSNLRRKAMESLLRGDELGGGSDQIIEQEAEQQKTTVPSLSSKEAAEKKEYPVDISLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASALDTTVMSPLALSSSSLPMSTVSTPPLSPLAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLGLESPAKHQQQQQLIEEIARISSPSFRNKEYSRIGDLKPTNLDDLLGSVDPSVLSQLHGLSAQPSMPTQLQSPNGLQMHQNMNHLRTSYPTNLPSSPARNSLGLGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRGTMSPHHFGQSAPSNTACRVSSALSDWRSPDGKLDWGMNGDELNKLKKSVSFGFRNNGNTKTNMARSENFEPDVSWVNSLVKDVPSEKKQQQFDPSREMLSPWVEQLYREHEQIVA 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0929 714 SMART ANK_2a 149 181 IPR002110 GO:0005515
Lele27g0929 714 SMART ANK_2a 114 144 IPR002110 GO:0005515
Lele27g0929 714 SMART ANK_2a 68 97 IPR002110 GO:0005515
Lele27g0929 714 ProSiteProfiles Zinc finger C3H1-type profile. 308 335 IPR000571 GO:0046872
Lele27g0929 714 Pfam Ankyrin repeats (3 copies) 107 181 IPR002110 GO:0005515
Lele27g0929 714 PANTHER UNKEMPT FAMILY MEMBER 74 682 IPR045234 -
Lele27g0929 714 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 313 333 IPR000571 GO:0046872
Lele27g0929 714 ProSiteProfiles Ankyrin repeat profile. 149 184 IPR002110 GO:0005515
Lele27g0929 714 SMART c3hfinal6 308 334 IPR000571 GO:0046872
Lele27g0929 714 SMART c3hfinal6 343 366 IPR000571 GO:0046872
Lele27g0929 714 FunFam Zinc finger CCCH domain-containing protein 66 266 334 - -
Lele27g0929 714 Gene3D - 44 250 IPR036770 -
Lele27g0929 714 SUPERFAMILY Ankyrin repeat 81 191 IPR036770 -
Lele27g0929 714 Gene3D - 309 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0929 Lele-ChrLele27 17230463 17235988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0929 39 681 C2H2 Transcription Factor Family AT5G12850 40.521 1.63e-141 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele27g0929 Ank_2 7.9e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1152 25 7432748 7434736 Lele27g0929 27 17230463 17235988 hybridization
Lele26g1151 26 7417367 7420444 Lele27g0929 27 17230463 17235988 hybridization