LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g0924	ATGACGAATTCACTCTCCCCCTTCACCTTCTTCTTCTCCGTCAACGTCTGCCTCATCGCCGCCGTCACCCTTTTCTCTTCAATCCCCTTCATCCATGCTCTGGGTTCCGGCGTCACTCTTGCCGTAATCGATGACTCCGGCACCGTCTGTGGCATCGTGGCAAGGGAACGGACGCAGCGCATTGAATGCTACCGTCGCGGGCAGATCGTTCCCGTTACTCCTAACATTTCTTTTTCGTCGATTTCCGGTGGGAGGAGCTACTTCTGCGGCCTTAGGTCCGGTAACTACAGTTTGCTTTGCTGGGATGCTGTTTTTTCCAACTCCAGCGGTTCTTTCCAAGGGAAGAGGCTTTACTCTAATTATACTGTTCTGTTGGAGAATCTGGCTGTTGGGGATACCCAAGTATGCGCGAGCGTCGTGGGTTCAGGCACCGTTCGGTGCTGGAGAACCAATGACATACCTCCGCCGGATCAATTTGCGTCGATAACATCTGGGTCTGGCTTTTCTTGCGGGATCTTGAAGAATACTTCTCGGGTTCATTGTTGGGGAATGCAACCCCTTTCGGGTCAAATACTGAACGGATTTGGAGACATGCCCATGTTGAGTCTTGTCGCCGGCGATTCACATGTTTGTGGATTGAATTCAACAGGGTTTGTGGTATGCGGAGGAAGTAACAGTTCCGGGCAGCTTAGTGTTCCCCAACAAGGAGGACCTCTGGAATATTCTGGCTTGGCTCTCGGAGCTGAACATAGCTGCGCGATCGAGCAGTCGAATCGTTCGGTTGTTTGCTGGGGAGGCGGAGGGCAATTCTCGGCGAATGTTACAGAACAAACATCTTTTGAGTTAATTGTTTCTGGGTCAAATTTTACTTGTGGATTAGTCTCCGGCAATTTTTCTGTAATGTGCTGGGGACCTGGTTGGTCTAATAGTTCTGGCTTTAATCCTCTCGAGCTTCCTTTATCTCCGATTCTCCCAGGGCCTTGTGTTCAATCTTGTGAGTGTGGTCAATATCCTCAATATCAAAATCTGTGTTCCGGTTCTGGTACTATATGCAGGCCCTGTTCTCCAAACATTTCAGCCCCAGTGCCGCCGCCATCGAGTTCTCCGCCACCATTGGGTTCTCCTCCGTCGTCTCGATCAAAGGCATTGACAAGGGGTTTATTGGCATTCGCCATTGTTGGATCTGTTGGAGCTTTTGCCGGTATATGCACTATAATTTATTGCTTGTGGACTGGAGTTTGTTTTGGTAAGAAGAAAGTTCACAATTCTGTCCAACCCAGAATCACCAGAGATGGTAGTTCCAATAATGGAGGTGCAGTGAATTCTAGCAATAGCCCTCCGTCGAGATCATCCACCATTAGACGTCAGGGCTCAAGGATAATGAGGCGCCAGAGGAGCGGAACATCATCCACAAAGCATCCTGATAGGGCAGAGGAATTCACTCTCGCCGAGCTTGTGACAGCCACTAATATTTTTTCCCTTGAAAACAAGATTGGTGCTGGTAGCTTTGGTGTTGTGTACAGAGGCAAACTTGCGGATGGTCGCGAGGTGGCGATCAAGAGGGGCGAGATTGGTTCAAAGATGAAGAAATTTCAAGAGAAAGAGAGTGCATTTGAGTCGGAACTCGCATTCTTGTCCCGGTTACACCACAAACACTTGGTCAGGCTAGTTGGTTTCTGTGAGGAAAAAGATGAGAGGCTCTTGGTGTATGAATACATGAAGAATGGAGCATTGCATGATCACTTGCATGACAAGAAAAATGTGGAAAAGAGTAGTAGCTTCTTGAATTCGTGGAAAATGAGGATCAAGATCGCGCTAGATGCTTCTCGAGGGATCGAATATCTCCACAACTATGCAGTCCCACCTATAATTCACAGAGACATCAAGTCTTCCAACATTCTTCTCGACGCGAATTGGACCGCTAGAGTGTCTGATTTTGGATTGTCATTGATGGGTCCGGACTCTGATCACGATTACCGGCCAACAAAGGCGGCGGGAACCGTAGGATACATCGATCCCGAGTACTATGGTCTGAATGTCTTGACAGCAAAGAGTGATGTTTATGGTTTTGGAATAGTACTGCTAGAACTCTTAACTGGTAAGAGAGCTATATTCAAAGATGGTGAAAATGGTGGCACCCCAGTGAGTTTGGTGGACTTTGCAGTGCCTGCGATAGTGGCCGACGAATTGCCCAAGATTCTGGACGCAAGGGTTGGGCCACCGGAGATGAACGAGGCGGAGGCGGTGGAGCTGGTGGCATATACCGCAATGCACTGCGTGCATTTGGAAGGGAAAGACAGACCAACAATGACTGACATTGTGGCCAATCTGGAGAGGGCTTTGTCTCTTTGTGATAGTAGCCATGGCAGCATCTCAAGTGGCACAATCTCTATTGTTTCAGAATGA	2406	0.4859	MTNSLSPFTFFFSVNVCLIAAVTLFSSIPFIHALGSGVTLAVIDDSGTVCGIVARERTQRIECYRRGQIVPVTPNISFSSISGGRSYFCGLRSGNYSLLCWDAVFSNSSGSFQGKRLYSNYTVLLENLAVGDTQVCASVVGSGTVRCWRTNDIPPPDQFASITSGSGFSCGILKNTSRVHCWGMQPLSGQILNGFGDMPMLSLVAGDSHVCGLNSTGFVVCGGSNSSGQLSVPQQGGPLEYSGLALGAEHSCAIEQSNRSVVCWGGGGQFSANVTEQTSFELIVSGSNFTCGLVSGNFSVMCWGPGWSNSSGFNPLELPLSPILPGPCVQSCECGQYPQYQNLCSGSGTICRPCSPNISAPVPPPSSSPPPLGSPPSSRSKALTRGLLAFAIVGSVGAFAGICTIIYCLWTGVCFGKKKVHNSVQPRITRDGSSNNGGAVNSSNSPPSRSSTIRRQGSRIMRRQRSGTSSTKHPDRAEEFTLAELVTATNIFSLENKIGAGSFGVVYRGKLADGREVAIKRGEIGSKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALHDHLHDKKNVEKSSSFLNSWKMRIKIALDASRGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMGPDSDHDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGFGIVLLELLTGKRAIFKDGENGGTPVSLVDFAVPAIVADELPKILDARVGPPEMNEAEAVELVAYTAMHCVHLEGKDRPTMTDIVANLERALSLCDSSHGSISSGTISIVSE	801

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g0924	801	FunFam	serine/threonine-protein kinase-like protein CCR1	461	572	-	-
	Lele27g0924	801	ProSiteProfiles	Protein kinase domain profile.	492	781	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g0924	801	Pfam	Protein kinase domain	493	774	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g0924	801	Gene3D	Phosphorylase Kinase; domain 1	453	572	-	-
	Lele27g0924	801	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	623	635	IPR008271	GO:0004672\|GO:0006468
	Lele27g0924	801	MobiDBLite	consensus disorder prediction	426	474	-	-
	Lele27g0924	801	Gene3D	-	194	351	IPR009091	-
	Lele27g0924	801	Gene3D	-	22	193	IPR009091	-
	Lele27g0924	801	ProSitePatterns	Protein kinases ATP-binding region signature.	498	520	IPR017441	GO:0005524
	Lele27g0924	801	CDD	STKc_IRAK	498	779	-	-
	Lele27g0924	801	SMART	serkin_6	492	781	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele27g0924	801	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4	201	787	IPR044815	GO:0004674
	Lele27g0924	801	SUPERFAMILY	Protein kinase-like (PK-like)	469	777	IPR011009	-
	Lele27g0924	801	FunFam	Serine/threonine-protein kinase-like protein CCR4	573	794	-	-
	Lele27g0924	801	Gene3D	Transferase(Phosphotransferase) domain 1	573	790	-	-
	Lele27g0924	801	SUPERFAMILY	RCC1/BLIP-II	33	268	IPR009091	-
	Lele27g0924	801	MobiDBLite	consensus disorder prediction	426	455	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g0924	Lele-ChrLele27	17169492	17171897	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g0924	9	801	Receptor kinase-like Gene Family	AT3G55950	61.399	0.0	910

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Lele27g0924		Pkinase	1.4e-44	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g1157	25	7499948	7502353	Lele27g0924	27	17169492	17171897	CCT
	Lele25g1147	25	7390741	7402155	Lele27g0924	27	17169492	17171897	CCT
	Lele25g1157	25	7499948	7502353	Lele27g0924	27	17169492	17171897	hybridization
	Lele26g1156	26	7484351	7486741	Lele27g0924	27	17169492	17171897	hybridization