Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0914 ATGAGGATTACATTGGACACAGAGGAGACGACCTCGGAGCCGAGGCGCTCAACAACGCCCAAAGAAGAAGTTGAATGGGTTCCACTTGAGAAACACCCAGTCTTCTGCTCCACGAATAACTCCATAGAAGGCGATTCCAGCGTTGCTTTTTCTAGAAATCTCGTGGCCTGGGATGGATCCTCTCGCCTCTATTTCTGGGAACCTAAGACCAACTGCCTCCATCGTCTGTCTCTTCGGCTGGGCGAGGCTGAGCCTACTTCTATACTTGCTGCTTCCCCTTCTAAGGTATTGCGAGCAGATGTGGAGATCAACTTTGCTATCCACAAAATCTCTATCAACAGGAATGGATCAGCATTGCTTCTTTTTGGTTCTGAAAGACTGTGTGTTATGTATCTGTATGGACGTACATCCAAAAAGGATGTAAATTTGATTTGCAGGACTATTATGATCGGTTCACAAACATATTTCAAGAGTAGCAATGATATACGTGTGCTAAAAGCTTTATGGCATCCATATAGTGATTGTCATGTGGGAATCCTTTCTTCTGACTCAGTTTTCAGGCTTTTTAATTTGGCCGTGGATCCTTTGCAACCTGAGCAAGAATATTATTTGCAGTCTGTGGATCCAGGCAGATCCAGAAATGCTTCATCAATGTGCCCAGCTGATTTTTCTTTTGGTGGTGACCACTTATGGGACAGGTTTAGCGTATTTATTTTGTTTGGTGATGGAGCTATTTACATCCTTTGCCCAGTTGTTCCATTTGGAAGTCTCTTCAAATCAGAATCTGTGCTAGAAATATACAATGATGCTCATACGTTTGGGCTCAAATCTGCAAACTCTAAAGCTGTTAGTAATTCAAAATTGGCAATCTCATGGTTGGAAGCAACATTCCCCGAGTTACAAAATCAAGAGACAGAAGAAAACATGTCTGTGCCAAGAGCTCATGCTTATGTTCAATTTGATTCATCTCTTACCCTGCAGGGACCTCTTCGTAGAGTAGGTCAGGGCGGGAATGAAGATTCAGTTGGTCGTAGTGCAGAATGTGAAGGCCGTGCAGTTGGTTTTCTTTATGATCTTGTAAGCAAAGACACAATATTGGTAACTTCTTGGAGTGGTGGGCAAGTACAGATAGATGCTCTGGCTGATGAGATCCAGCCTGTGTGGAGTGCTGGTAGTCCTCCACGTGTTCGTGTTGATTCCCACAACCATATTCTTGGCCTTGCCATGATTTGTGAGTCAATAACCAGTGGCCTACAGGAGAAGCTTGATCATACTGTCTGGTTGGGCAATCCACCACCACTGCTGAGACTGGCTATTGTTGACTTGGCTCTGCCTCGGAGAGTGGAAAGTGGTTATAATATTGCATTGTTTGTGGATCCTCTTATGCCAGAAAGAATATATTCCGTTCATGATGGTGGGATTGATTCAATAGTGTTGCATTTCCTTCCATTCACAAGTCAGGCAAATGGCAAGGATGATACAATGAGAACTCCTTCTGTGCATCCTGTTCTAAATACATGTCAGAGTGGGAGCACCACAGCATCTCCTCTCTGTGGTTTTGCATCTTTGTCAGATTCCTTTGGATATTCATGGATTGTGGCAGTCACTCTTTCTCAAGAGTGCATTGTGCTAGAGACAAAAACGTGGAACCTATTGCTGCCACCAAATGTTGATATGGAGAAAAAACCCATTCAATTAGAGGATGAATCAGAAGAGAGAGACATACCAACTATAATTAGCAAAGAATTACTTGGTGGGCCTAGGACGGTACTTGTCCCTCAAGCGTCTCCAAGCTTACGTTCTATTTCACCTGATTCAATTGAAGGCAGATCAGCATTGCATCAGTATTTCAAGCTTTTTCATGAAACTTATGTGGAGTATGCACATAAGGTGTACTTGGAACTCAAGCATCATGCTCCTCAGTTGAAGAAAATTGTTGATGACCAACATGCTCGTTTGAGTGATGCACAACAGAAGCTTTTGAAAGTTGCGGAGAAGCAGCCACTATTAGTGAAAAGAATAGATCGGGCAGTTCAAATGCATAGTTCTTTGGAAGAGCGCTTGCAACAATTAAAGAACTTACCTGGTGCTCACAAAAAGCCATTATCTAAAGCCGAGCGACAATTCAATTCTGAGCTTGACCACTTCAGGAAAGTTGAGTTGGATTCTTTGCATTCTTCTGTTGATGCTTTAAGTGCTAGGCTGAGGAGGTACATGCAGGCAACCAAAGCCAATAGTAGCCCCCAAAAGCAAATAACAGGTAGGAAGAGTTATGTTGACAAGGTCCAGATATCGATGCTCAAATCATCGCTTGAAAAACTTTCACTCTTAAATAGCGAGAATTCGAAAAAAGTTAAGCTTGTTGAGTCTGCATTGAAAACACGGGAAAAGGGTGGCAGGGAATCAAGCCTTCTTCCTAAACCTTGA 2427 0.4293 MRITLDTEETTSEPRRSTTPKEEVEWVPLEKHPVFCSTNNSIEGDSSVAFSRNLVAWDGSSRLYFWEPKTNCLHRLSLRLGEAEPTSILAASPSKVLRADVEINFAIHKISINRNGSALLLFGSERLCVMYLYGRTSKKDVNLICRTIMIGSQTYFKSSNDIRVLKALWHPYSDCHVGILSSDSVFRLFNLAVDPLQPEQEYYLQSVDPGRSRNASSMCPADFSFGGDHLWDRFSVFILFGDGAIYILCPVVPFGSLFKSESVLEIYNDAHTFGLKSANSKAVSNSKLAISWLEATFPELQNQETEENMSVPRAHAYVQFDSSLTLQGPLRRVGQGGNEDSVGRSAECEGRAVGFLYDLVSKDTILVTSWSGGQVQIDALADEIQPVWSAGSPPRVRVDSHNHILGLAMICESITSGLQEKLDHTVWLGNPPPLLRLAIVDLALPRRVESGYNIALFVDPLMPERIYSVHDGGIDSIVLHFLPFTSQANGKDDTMRTPSVHPVLNTCQSGSTTASPLCGFASLSDSFGYSWIVAVTLSQECIVLETKTWNLLLPPNVDMEKKPIQLEDESEERDIPTIISKELLGGPRTVLVPQASPSLRSISPDSIEGRSALHQYFKLFHETYVEYAHKVYLELKHHAPQLKKIVDDQHARLSDAQQKLLKVAEKQPLLVKRIDRAVQMHSSLEERLQQLKNLPGAHKKPLSKAERQFNSELDHFRKVELDSLHSSVDALSARLRRYMQATKANSSPQKQITGRKSYVDKVQISMLKSSLEKLSLLNSENSKKVKLVESALKTREKGGRESSLLPKP 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0914 808 Pfam Nuclear pore component 453 775 IPR019321 -
Lele27g0914 808 Pfam Nuclear pore component 29 226 IPR019321 -
Lele27g0914 808 Coils Coil 674 694 - -
Lele27g0914 808 MobiDBLite consensus disorder prediction 1 22 - -
Lele27g0914 808 PANTHER NUCLEOPORIN NUP84-RELATED 19 797 IPR037700 GO:0000055|GO:0000056|GO:0006913|GO:0017056
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0914 Lele-ChrLele27 17091660 17097479 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0914 27 17091660 17097479 Lele25g1164 25 7577944 7579902 CCT
Lele27g0914 27 17091660 17097479 Lele26g1163 26 7550633 7553020 CCT
Lele27g0914 27 17091660 17097479 Lele27g0915 27 17100284 17102303 CCT
Lele27g0914 27 17091660 17097479 Lele28g1155 28 7527764 7528328 CCT
Lele27g0914 27 17091660 17097479 Lele27g0914 27 17091660 17097479 ECH
Lele25g1165 25 7582400 7588290 Lele27g0914 27 17091660 17097479 hybridization
Lele26g1164 26 7554550 7560622 Lele27g0914 27 17091660 17097479 hybridization