Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0904 ATGGTGAAACCCACAAAGGCCGAGAAGAAGATCGCTTACGATGCCAAATTGTGCCAGCTTCTGGAGGAGTACACCCAGATCCTTGTGGTGGCGGCCGACAACGTCGGATCCAACCAGCTTCAGAACATCAGGAGGGGTCTGCGTGGTGACTCGGTGGTGCTCATGGGCAAGAACACCATGATGAAGCGCTCTGTTAGGATTCATGCTGAGAACACCGACAATAATGCCTTCCTCAACCTTATCCCTCTGCTTCAGGGAAACGTGGGGCTAATTTTCACTAAAGGAGACCTGAAGGAGGTTAGAGAGGAGGTTGCCAAGTACAAGGTTGGAGCTCCTGCCCGTGTGGGTTTGGTTGCTCCCATTGATGTCGTTGTTCCTCCTGGCAACACAGGGCTGGATCCCTCTCAGACATCTTTCTTCCAGGTGCTCAACATCCCCACCAAGATTAACAAGGGTACTGTGGAAATTATCACCCCTGTGGAACTTATCAAGAAGGGTGACAAGGTCGGCTCCTCAGAAGCTGCTCTGCTTGCAAAACTTGGGATTAGGCCCTTCTCATATGGGCTCGTGGTCCTATCTGTGTATGATAACGGTTCAGTGTTTAGCCCTGAGGTTCTTGATCTTACTGAAGATGACCTTGTTGAGAAATTCGCTACTGGTGTGTCCATGGTGACATCACTTTCTTTGGCCGTCTCATACCCAACAATTGCAGCTGCACCCCACATGTTTATCAATGGCTACAAAAACGTATTGGCTGTTTCAGTGGACACTAATTACTCTTACCCTCAGGCTGAGAAGGTTAAGGAGTACCTAGAGGATCCCAGCAAGTTTGCCGTTGCTGCTGTTGCTGTTGCTTCTTTTGCTGATTCAGGTGCTGCTCCAGCTGCTGCTGCTGCAGAGGAGAAGAAGGAGGAGCCAGCTGAAGAATCTGATGATGACATGGGCTTCAGCCTGTTTGATTAA 963 0.4984 MVKPTKAEKKIAYDAKLCQLLEEYTQILVVAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRSVRIHAENTDNNAFLNLIPLLQGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVEKFATGVSMVTSLSLAVSYPTIAAAPHMFINGYKNVLAVSVDTNYSYPQAEKVKEYLEDPSKFAVAAVAVASFADSGAAPAAAAAEEKKEEPAEESDDDMGFSLFD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0904 320 FunFam 60S acidic ribosomal protein P0 112 185 - -
Lele27g0904 320 Gene3D - 5 208 IPR043141 -
Lele27g0904 320 CDD Ribosomal_P0_L10e 8 184 - -
Lele27g0904 320 Pfam Insertion domain in 60S ribosomal protein L10P 113 182 IPR040637 -
Lele27g0904 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 303 - -
Lele27g0904 320 SUPERFAMILY Ribosomal protein L10-like 7 133 IPR043141 -
Lele27g0904 320 Pfam Ribosomal protein L10 6 107 IPR001790 -
Lele27g0904 320 MobiDBLite consensus disorder prediction 295 320 - -
Lele27g0904 320 Pfam 60s Acidic ribosomal protein 233 319 - -
Lele27g0904 320 PIRSF L10E 1 320 IPR030670 GO:0042254
Lele27g0904 320 MobiDBLite consensus disorder prediction 305 320 - -
Lele27g0904 320 Gene3D - 113 184 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0904 Lele-ChrLele27 17001922 17003838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0904 2 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.704 0.0 513
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0904 27 17001922 17003838 Lele25g1174 25 7663490 7666752 CCT
Lele27g0904 27 17001922 17003838 Lele26g1175 26 7632645 7636402 CCT
Lele27g0904 27 17001922 17003838 Lele27g0906 27 17017612 17020825 CCT
Lele27g0904 27 17001922 17003838 Lele28g1168 28 7618012 7621760 CCT
Lele27g0904 27 17001922 17003838 Lele28g1169 28 7636332 7638230 ECH
Lele27g0904 27 17001922 17003838 Lele27g0904 27 17001922 17003838 ECH
Lele25g1175 25 7701032 7702941 Lele27g0904 27 17001922 17003838 hybridization
Lele26g1176 26 7655894 7657806 Lele27g0904 27 17001922 17003838 hybridization