Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0898 ATGGAAGATGGCATGTCAGGGTTTTGTATCAGAGCAGGAAGTTTTCGAAGAGGTGATAGTAATAATGGGAATAGTGGAAGTAGTGGAACTAAGTGTGGTCGTTGGAATCCAACAACAGAACAGGTTAAGCTTCTAACTGACTTGTTCATGTCTGGTCTCAGAACTCCAAGCACCGATCAGATTCAGGAGATCTCCACTGAGCTTAGCTATTATGGCAAGATTGAGAGCAAGAACGTGTTTTATTGGTTTCAGAACCATAAAGCCAGGGAAAGACAGAAGCGTCGCAAGGTCTCATTCCACGACAAGGATCTCAGTAGTAATAATAATATTTTTCGTCAAAACTCTCTGTTATCTTCTTCCACACACAATTTTGGGGAGGTTGATCAAGTTCAAGAGCCAGAGAGAGTGATAGAGACTCTTCAACTGTTTCCATTGAACTCCATTGATGAATCAGAAGCAGAGAAACTGAGGGGACAAGCAAATAAATATGGGGATGATAGTACGATGTTTCAGTCGTCAGTAGGGGAACATATGGAGAACCCAGCATTAGATTTGCGCTTAAGCTTTCTGTAA 573 0.4171 MEDGMSGFCIRAGSFRRGDSNNGNSGSSGTKCGRWNPTTEQVKLLTDLFMSGLRTPSTDQIQEISTELSYYGKIESKNVFYWFQNHKARERQKRRKVSFHDKDLSSNNNIFRQNSLLSSSTHNFGEVDQVQEPERVIETLQLFPLNSIDESEAEKLRGQANKYGDDSTMFQSSVGEHMENPALDLRLSFL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0898 190 SUPERFAMILY Homeodomain-like 33 96 IPR009057 -
Lele27g0898 190 FunFam WUSCHEL-related homeobox 11 31 99 - -
Lele27g0898 190 SMART HOX_1 30 97 IPR001356 GO:0003677
Lele27g0898 190 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 19 109 IPR044555 GO:0003700|GO:0099402
Lele27g0898 190 Pfam Homeodomain 32 92 IPR001356 GO:0003677
Lele27g0898 190 ProSiteProfiles 'Homeobox' domain profile. 28 93 IPR001356 GO:0003677
Lele27g0898 190 CDD homeodomain 34 94 IPR001356 GO:0003677
Lele27g0898 190 Gene3D - 31 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0898 Lele-ChrLele27 16958221 16958888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0898 8 190 Wox Gene Family AT3G11260 53.299 1.41e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele27g0898 Homeodomain 1.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1182 25 7763149 7763810 Lele27g0898 27 16958221 16958888 CCT
Lele27g0898 27 16958221 16958888 Lele25g1189 25 7828932 7830659 CCT
Lele27g0898 27 16958221 16958888 Lele26g1196 26 7782278 7786532 CCT
Lele27g0898 27 16958221 16958888 Lele27g0888 27 16880523 16882225 CCT
Lele27g0898 27 16958221 16958888 Lele28g1188 28 7752864 7758577 CCT
Lele27g0898 27 16958221 16958888 Lele28g1177 28 7677047 7677707 ECH
Lele27g0898 27 16958221 16958888 Lele27g0898 27 16958221 16958888 ECH
Lele25g1182 25 7763149 7763810 Lele27g0898 27 16958221 16958888 hybridization
Lele26g1184 26 7690216 7701508 Lele27g0898 27 16958221 16958888 hybridization